Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N20
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 114 5e-27
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 112 2e-26
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 1.4
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 26 1.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 2.4
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 4.1
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 4.1
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 5.5
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 24 9.6
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 114 bits (274), Expect = 5e-27
Identities = 57/116 (49%), Positives = 69/116 (59%)
Frame = +2
Query: 38 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 217
MSKVS + V +++ S+EKKR F ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 1 MSKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRP 60
Query: 218 KMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXFDACLASESLI 385
M +CILGD D AK V M + +DA +ASE LI
Sbjct: 61 NMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLI 116
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 112 bits (269), Expect = 2e-26
Identities = 57/116 (49%), Positives = 70/116 (60%)
Frame = +2
Query: 38 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 217
MSKVS ++ V +++ S+EKKR F ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 1 MSKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRP 60
Query: 218 KMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXFDACLASESLI 385
M +CILGD D AK V M + +DA +ASE LI
Sbjct: 61 NMAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLI 116
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 53 RDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRF 181
++ L++ V SKE ++ T+E Q+ N+D QK F
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 1.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = -2
Query: 67 IERITRYFRHFYEPTTLH--VHL 5
I++IT F HF+ P LH VHL
Sbjct: 216 IDKITSLFIHFFPPLVLHTIVHL 238
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 2.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 71 CVNAVIQSSKEKKRKFLETVELQIGLKNYD-PQKDKRFSG 187
C N +++SS K F +TV + +YD P+ D + G
Sbjct: 939 CDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 77 NAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 223
+A IQ + E+K FL ++ + N D KD+ KY+ P++
Sbjct: 170 DAPIQINHEQKEDFLVSIPRPTPMTNLDDGKDEIGQPDPHRKYMAPPRV 218
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 141 ICSSTVSKNLRFFSFEDWMTAL 76
IC S + L F + EDW+ AL
Sbjct: 900 ICESMKNVKLDFVTLEDWLKAL 921
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 57 IRSMSALTQSSSLQKRRNVNF*KLLNCK 140
IR + + + ++KRRN+N+ + L+CK
Sbjct: 620 IRYGKSHNEDTCIKKRRNLNYNENLSCK 647
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 119 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 232
L+ +++ GLK Y+ ++ K S T + ++ + VC
Sbjct: 542 LDKLDITTGLKTYEYEETKDSSDTGRFRFFKKIINTVC 579
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,228,047
Number of Sequences: 5004
Number of extensions: 18836
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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