Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N20
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 128 1e-30
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 127 3e-30
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 127 3e-30
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 125 1e-29
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 34 0.045
09_01_0136 - 2030523-2031062,2032349-2032534,2032642-2032796,203... 28 2.2
02_05_1180 + 34776151-34776480,34776578-34776760,34776849-347771... 28 2.2
04_04_0838 - 28550036-28550237,28550595-28550676,28550972-285510... 27 6.9
01_05_0654 + 23965868-23967718 27 6.9
09_04_0015 + 13777383-13777621,13777887-13777972,13778094-137782... 26 9.1
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 128 bits (310), Expect = 1e-30
Identities = 60/116 (51%), Positives = 80/116 (68%)
Frame = +2
Query: 38 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 217
MSK+ D L E ++ + S+EK+RKF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 218 KMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXFDACLASESLI 385
KM+VC+LGD QH +EA+++ + MD E + A LASE++I
Sbjct: 61 KMKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAII 116
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 127 bits (307), Expect = 3e-30
Identities = 59/116 (50%), Positives = 80/116 (68%)
Frame = +2
Query: 38 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 217
MSK+ D L E ++ + S+EK+RKF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 218 KMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXFDACLASESLI 385
K++VC+LGD QH +EA+++ + MD E + A LASE++I
Sbjct: 61 KLKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAII 116
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 127 bits (306), Expect = 3e-30
Identities = 61/116 (52%), Positives = 78/116 (67%)
Frame = +2
Query: 38 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 217
MSK+ + L E ++ V+ KEK RKF ETVELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 218 KMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXFDACLASESLI 385
KM+VC+LGD QH +EA+++ + MD E + A LASE++I
Sbjct: 61 KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAII 116
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 125 bits (301), Expect = 1e-29
Identities = 60/117 (51%), Positives = 79/117 (67%)
Frame = +2
Query: 35 KMSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPR 214
++ K+ + L E ++ V+ SKEK RKF ETVELQIGLKNYDPQKDKRFSG+VKL +IPR
Sbjct: 18 QLHKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPR 77
Query: 215 PKMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXFDACLASESLI 385
PKM+VC+LGD QH +EA+++ + MD E + A LASE++I
Sbjct: 78 PKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAII 134
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 33.9 bits (74), Expect = 0.045
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 92 SSKEKKRKFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCILGDQQHCDEAK 268
S+ EKKR F ETVE + L DP++ D+ G + L + ++V + + DEA+
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEAR 337
>09_01_0136 -
2030523-2031062,2032349-2032534,2032642-2032796,
2032917-2033079
Length = 347
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 196 LDGAGETLVLLRVIVLETD 140
LDGAGE LVLLR +L+ D
Sbjct: 65 LDGAGERLVLLRADLLDPD 83
>02_05_1180 +
34776151-34776480,34776578-34776760,34776849-34777198,
34777430-34777631
Length = 354
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -2
Query: 241 TENAHLHLRTRDVLKLDGAGETLVLLRVIVLETD 140
T+NAHL L LDGAGE L L R VL+++
Sbjct: 61 TKNAHL-------LALDGAGERLTLCRADVLDSE 87
>04_04_0838 -
28550036-28550237,28550595-28550676,28550972-28551011,
28551342-28551416,28551448-28551543,28551710-28551805,
28551897-28551974,28552064-28552170,28552450-28552477,
28552777-28552898,28554106-28554172,28554336-28554508,
28554763-28554846,28555616-28555733,28556093-28556164,
28557026-28557118,28557484-28557636,28558000-28558086,
28559436-28559528,28560416-28560643,28561106-28561207,
28561390-28561596,28561798-28561846,28562385-28562537,
28562649-28562712,28562905-28563175,28564008-28564072,
28564184-28564337
Length = 1052
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 89 QSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKL 199
+ KEKK KFL+ + + + N PQ + +S + L
Sbjct: 192 EEKKEKKPKFLKGLRSKTEVSNPSPQPENHYSQLLDL 228
>01_05_0654 + 23965868-23967718
Length = 616
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 234 MHTCILGRGMYLSLTVPEKRLSFCGS 157
MH CI+ +G+ LS +V + L+ GS
Sbjct: 573 MHACIVKKGLLLSKSVVQSLLNMYGS 598
>09_04_0015 +
13777383-13777621,13777887-13777972,13778094-13778208,
13778380-13778680
Length = 246
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/43 (25%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 83 VIQSSKEKKRKFLE-TVELQIGLKNYDPQKDKRFSGTVKLKYI 208
V+ S + + +LE ++ ++GL+ +P++ +GT+ L Y+
Sbjct: 130 VVNSLRSNPKAWLEFMMKFELGLEKPEPRRALMSAGTIALAYV 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,876,276
Number of Sequences: 37544
Number of extensions: 120252
Number of successful extensions: 272
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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