Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N20
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   3.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   3.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   8.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 64  ERITRYFRHFYE 29
           +RIT YF H Y+
Sbjct: 410 QRITEYFEHRYQ 421


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 64  ERITRYFRHFYE 29
           +RIT YF H Y+
Sbjct: 378 QRITEYFEHRYQ 389


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/43 (20%), Positives = 19/43 (44%)
 Frame = +2

Query: 98  KEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQ 226
           +E   +F    + Q+G +  + +KD  + G      I  P ++
Sbjct: 464 EEAACRFSAVAQAQLGGERQNGRKDSGYDGAASTAVIHEPVVE 506


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 84  SSSLQKRRNVNF*KLLNCK 140
           S+SL+      F  LLNCK
Sbjct: 18  SASLENDNEFGFSYLLNCK 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,978
Number of Sequences: 438
Number of extensions: 1345
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)