Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N19
         (372 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   203   5e-53
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   203   5e-53
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   203   5e-53
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   198   3e-51
AE013599-1564|AAM68647.1|  737|Drosophila melanogaster CG8772-PB...    28   3.4  
AY119597-1|AAM50251.1|  712|Drosophila melanogaster LD19808p pro...    27   7.9  
AY060712-1|AAL28260.1|  280|Drosophila melanogaster GH15448p pro...    27   7.9  
AF435962-1|AAL31972.1|  280|Drosophila melanogaster mitochondria...    27   7.9  
AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2 pr...    27   7.9  
AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon prot...    27   7.9  
AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB...    27   7.9  
AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA...    27   7.9  
AE013599-3422|AAF46869.1|  280|Drosophila melanogaster CG4207-PA...    27   7.9  

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  203 bits (496), Expect = 5e-53
 Identities = 92/111 (82%), Positives = 101/111 (90%)
 Frame = +2

Query: 38  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFTI 370
           V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EK  E FR++YDVKGRF I
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVI 111


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  203 bits (496), Expect = 5e-53
 Identities = 92/111 (82%), Positives = 101/111 (90%)
 Frame = +2

Query: 38  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFTI 370
           V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EK  E FR++YDVKGRF I
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVI 111


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  203 bits (496), Expect = 5e-53
 Identities = 92/111 (82%), Positives = 101/111 (90%)
 Frame = +2

Query: 38  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFTI 370
           V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EK  E FR++YDVKGRF I
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVI 111


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  198 bits (482), Expect = 3e-51
 Identities = 90/111 (81%), Positives = 99/111 (89%)
 Frame = +2

Query: 38  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAE 60

Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFTI 370
           V KIV QRL+KV GKVRTDPTYPAG+MDV+++EK  E FR++YDVKGRF I
Sbjct: 61  VTKIVMQRLVKVYGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVI 111


>AE013599-1564|AAM68647.1|  737|Drosophila melanogaster CG8772-PB,
           isoform B protein.
          Length = 737

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +2

Query: 83  KAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK---YALTGNEVLKIVKQRLIKV 253
           ++W L +     AP P  G +   E       +R ++     ++TG E++++VKQ   KV
Sbjct: 4   RSWNLLQYATEKAPIPLDG-YTAEEAAEFKDSIRQKIVDDLKSMTGEELIELVKQNAAKV 62

Query: 254 -DGKVRTDPTYP 286
            + KV   PT P
Sbjct: 63  EEEKVEIPPTEP 74


>AY119597-1|AAM50251.1|  712|Drosophila melanogaster LD19808p
           protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -1

Query: 285 GYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPP 106
           G V S  + P+T ++R +TI  T      Y  RF ++I + +  + L G  EG G  T  
Sbjct: 141 GVVNSGNSTPTTSLKRSYTIWQTD-----YAQRFIKRIQT-ELKQYLEGKKEGGGGSTSA 194

Query: 105 SLSNI 91
           S  +I
Sbjct: 195 SPHHI 199


>AY060712-1|AAL28260.1|  280|Drosophila melanogaster GH15448p
           protein.
          Length = 280

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 56  KHLKRLNAPK-AWMLDKLGGVYAPRPS 133
           K+L+R + P+  W+L+KL  VY P P+
Sbjct: 153 KYLRRWDYPRFEWILEKLDLVYKPPPT 179


>AF435962-1|AAL31972.1|  280|Drosophila melanogaster mitochondrial
           ribosomal proteinS15 protein.
          Length = 280

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 56  KHLKRLNAPK-AWMLDKLGGVYAPRPS 133
           K+L+R + P+  W+L+KL  VY P P+
Sbjct: 153 KYLRRWDYPRFEWILEKLDLVYKPPPT 179


>AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2
           protein.
          Length = 1711

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -1

Query: 285 GYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPP 106
           G V S  + P+T ++R +TI  T      Y  RF ++I + +  + L G  EG G  T  
Sbjct: 141 GVVNSGNSTPTTSLKRSYTIWQTD-----YAQRFIKRIQT-ELKQYLEGKKEGGGGSTSA 194

Query: 105 SLSNI 91
           S  +I
Sbjct: 195 SPHHI 199


>AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon
           protein.
          Length = 1695

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -1

Query: 285 GYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPP 106
           G V S  + P+T ++R +TI  T      Y  RF ++I + +  + L G  EG G  T  
Sbjct: 141 GVVNSGNSTPTTSLKRSYTIWQTD-----YAQRFIKRIQT-ELKQYLEGKKEGGGGSTSA 194

Query: 105 SLSNI 91
           S  +I
Sbjct: 195 SPHHI 199


>AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB,
           isoform B protein.
          Length = 1695

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -1

Query: 285 GYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPP 106
           G V S  + P+T ++R +TI  T      Y  RF ++I + +  + L G  EG G  T  
Sbjct: 141 GVVNSGNSTPTTSLKRSYTIWQTD-----YAQRFIKRIQT-ELKQYLEGKKEGGGGSTSA 194

Query: 105 SLSNI 91
           S  +I
Sbjct: 195 SPHHI 199


>AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA,
           isoform A protein.
          Length = 1711

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -1

Query: 285 GYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPP 106
           G V S  + P+T ++R +TI  T      Y  RF ++I + +  + L G  EG G  T  
Sbjct: 141 GVVNSGNSTPTTSLKRSYTIWQTD-----YAQRFIKRIQT-ELKQYLEGKKEGGGGSTSA 194

Query: 105 SLSNI 91
           S  +I
Sbjct: 195 SPHHI 199


>AE013599-3422|AAF46869.1|  280|Drosophila melanogaster CG4207-PA
           protein.
          Length = 280

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 56  KHLKRLNAPK-AWMLDKLGGVYAPRPS 133
           K+L+R + P+  W+L+KL  VY P P+
Sbjct: 153 KYLRRWDYPRFEWILEKLDLVYKPPPT 179


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,966,605
Number of Sequences: 53049
Number of extensions: 334162
Number of successful extensions: 871
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 984962268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)