Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N19
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   164   2e-41
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    29   1.1  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    29   1.1  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    27   4.3  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    27   4.3  
U55370-4|AAK82906.1|  179|Caenorhabditis elegans Taf (tbp-associ...    26   9.9  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  164 bits (399), Expect = 2e-41
 Identities = 74/109 (67%), Positives = 88/109 (80%)
 Frame = +2

Query: 44  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 223
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 224 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFTI 370
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+ NE FR++YD KGR+ +
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVV 110


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -3

Query: 262 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 170
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -3

Query: 262 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 170
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 351 TSYITRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMR 241
           T+     N F FS  T S+NP GY+  V     TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 316 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 221
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 316 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 221
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>U55370-4|AAK82906.1|  179|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 10,
           isoform b protein.
          Length = 179

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 116 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 283
           Y  RP+  P       P V  LR+ L   LTGN+  + V++ L  V      D T+
Sbjct: 26  YFQRPAAAPQVYSTLEPSVQNLRSSLHKPLTGNQ-QQFVQKTLENVQKNPSQDDTH 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,567,237
Number of Sequences: 27780
Number of extensions: 164965
Number of successful extensions: 511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)