Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N16
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    25   3.2  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   4.3  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   4.3  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   5.6  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    24   5.6  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    24   5.6  
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer...    24   5.6  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    24   5.6  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    24   5.6  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    23   7.5  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    23   7.5  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    23   7.5  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    23   9.9  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    23   9.9  

>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 268 LREITTAI*QKSPVTIGPAVPKI 200
           LRE    I QK  V   PAVPK+
Sbjct: 333 LREYLRYIHQKQKVNAAPAVPKV 355


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 101  NIIFLLNR-YECSIYETYTENTIF*IF-IC 184
            +++FLL   Y C I  TY  N+IF I  IC
Sbjct: 1281 HLLFLLTIFYPCPIAYTYVRNSIFLILSIC 1310


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 173 IFICLFVMGNLRNGWTDCDGRLL 241
           + +CL +M   R  WT+ + +LL
Sbjct: 51  LILCLTIMCEQRRSWTEMEEKLL 73


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 269 VTRNNYSYLTKVSRHNRSSRSEDYP 195
           +T ++ +Y+TK  R  R  +S D+P
Sbjct: 106 LTSSSANYMTKSERQMRPPKSYDFP 130


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -1

Query: 220 GPAVPKITHYKQTDKNLKNCIFGIGLVY 137
           GP +P++  Y+    ++K+ IFG+ + +
Sbjct: 431 GPFLPRVEIYEDYYNDIKDQIFGVDVEF 458


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 21  LINRSEIYLLNFFIHTNK*N*SDFKVKILFFYSIDTNVVYTRPIPKIQFFKFLSVCL 191
           ++  S  Y L+FFI         F    +FF S+   +VY   + K+ F K+L + L
Sbjct: 2   VLKHSVTYNLSFFI--------SFTFSSIFFSSLILFLVYKSVLSKLFFIKYLMLNL 50


>SPAC56F8.04c
           |coq2|ppt1|para-hydroxybenzoate--
           polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 358

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 232 PVTIGPAVPKITHYKQTDKNLKNCIFGIGLV 140
           PV I PA+ +IT+Y Q    L    FG G V
Sbjct: 186 PVCIYPAMKRITYYPQVVLGL---TFGYGAV 213


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 173 IFICLFVMGNLRNGWTDCDGRLLSDSCSYFA*LRLTLI 286
           + IC  + G ++ G  + D  L+  +CS  A L L L+
Sbjct: 161 VVICFVLFGCIKFGNLNLDKALICSTCSISAALLLFLL 198


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 135 VYTRPIPKIQFFKFLSV 185
           VY R +PKI  F++LS+
Sbjct: 208 VYARVLPKIGDFRYLSI 224


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 173 IFICLFVMGNLRNGWTDCDGRLLSDS 250
           +++ L  M      WTDCD  +LS S
Sbjct: 217 VYLVLEYMSGGEVPWTDCDSPVLSIS 242


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 289 NNQSKPKLREITTAI*QKSPVTIGPAVPKITHYKQTDKNLK 167
           N+QS  + R+  T++  K     G A+P+I   + T ++++
Sbjct: 30  NSQSSTEPRKNATSLDSKKTTKKGVALPEIAERELTQEDIE 70


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 245 LTKVSRHNRSSRSEDYPLQTD 183
           LT VSR  R SRS   P+  D
Sbjct: 391 LTVVSRFLRKSRSSQIPMNVD 411


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 173 IFICLFVMGNLRNGWTDCDGRLLSDSCSYFA*LRLTLII 289
           + IC  + G +++G  + +  L+  +CS  A L   L++
Sbjct: 217 VVICFILFGCVKDGRLNLNKALICSTCSISAALFFILLL 255


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 173 IFICLFVMGNLRNGWTDCDGRLLSDSCSYFA*LRLTLII 289
           + IC  + G +++G  + +  L+  +CS  A L   L++
Sbjct: 207 VVICFILFGCVKDGRLNLNKALICSTCSISAALFFILLL 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,133,713
Number of Sequences: 5004
Number of extensions: 19939
Number of successful extensions: 42
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)