Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N16
         (304 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333...    26   4.9  
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395...    26   4.9  
02_05_0783 + 31723330-31723585,31723683-31723857,31723953-317241...    25   8.6  

>12_02_1283 -
           27532143-27532517,27532602-27532906,27533053-27533311,
           27534412-27534618,27534726-27535181,27535866-27535963,
           27536657-27536785,27537371-27537605,27538932-27539039,
           27539110-27539160,27539261-27539445,27540207-27540274,
           27541535-27541600,27541678-27541730,27542536-27542653,
           27542743-27542844,27543525-27543682,27543763-27543840,
           27543978-27544069,27544308-27544458
          Length = 1097

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 248 YLTKVSRHNRSSRSEDYPLQTDR*KFKK 165
           ++  V+ HN ++ S  +  QTD  KFK+
Sbjct: 624 FVVSVTNHNGNTNSSQFTWQTDLKKFKR 651


>07_03_0539 -
           19237573-19239169,19239258-19239410,19239505-19239566,
           19239855-19240103,19240248-19240337,19240453-19240632,
           19240713-19240942,19241558-19241735,19242327-19242432,
           19242786-19242883,19243683-19243813,19243908-19244087,
           19244179-19244443,19244557-19244627,19244707-19244922,
           19245147-19245294
          Length = 1317

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 248 YLTKVSRHNRSSRSEDYPLQTD 183
           Y+ K SRH  SSRS   P ++D
Sbjct: 216 YMNKRSRHEHSSRSSRTPARSD 237


>02_05_0783 +
           31723330-31723585,31723683-31723857,31723953-31724166,
           31724388-31725032,31725199-31725335,31725440-31725554
          Length = 513

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 197 GNLRNGWTDCDGRLLSDSC 253
           G +RN    CDGR +++SC
Sbjct: 49  GGIRNNIGYCDGRSINESC 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,957,121
Number of Sequences: 37544
Number of extensions: 90044
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)