Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N16
         (304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans trehalose-6-p...    28   1.5  
U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical ...    26   6.0  
AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine r...    26   6.0  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans
            trehalose-6-phosphate synthase protein.
          Length = 1230

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 140  YETYTENTIF*IFICLFVMGNLRNGWTDCDGRLLSDSCSY 259
            Y+   EN +  ++ CL +       +TD DG L S SCSY
Sbjct: 915  YKKEVENAVELLYFCLIISTIF---FTDRDGTLKSYSCSY 951


>U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical
           protein F28C10.4 protein.
          Length = 391

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 176 FICLFVMGNLRNGWTDCDGRLLSDSCSYF 262
           F+C++    L N +T    RL+ D+C YF
Sbjct: 32  FLCIY-FNKLGNDYTSEIARLIIDNCEYF 59


>AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical
           protein T10D4.6 protein.
          Length = 796

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 182 CLFVMGNLRNGWTDCD 229
           C + +  L  GW DCD
Sbjct: 254 CTYALAELEQGWKDCD 269


>AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein130 protein.
          Length = 376

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 95  SQNIIFLLNRYECSIYETYTENTIF*IFICLFVMGNLR 208
           S  I  +L+++E   Y   T NTI   F+C  +    R
Sbjct: 299 SVGIKLILDQFEALFYMLLTANTISHFFVCFVLSSQYR 336


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +1

Query: 43  TY*IFLSILINKIEVILKSKYYFFTQ*IRM*YIRDLYRKYNFLNFYLSVCNG*SSERLD 219
           TY  +   L +K   ILKS ++F+   + + + +   +K+    F+ SVC+  +S  L+
Sbjct: 493 TYHTYCVTLHDKFRGILKSDFFFYKFDL-ISFSKSRIKKFRVNIFFQSVCHSVNSSLLN 550


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +1

Query: 43  TY*IFLSILINKIEVILKSKYYFFTQ*IRM*YIRDLYRKYNFLNFYLSVCNG*SSERLD 219
           TY  +   L +K   ILKS ++F+   + + + +   +K+    F+ SVC+  +S  L+
Sbjct: 493 TYHTYCVTLHDKFRGILKSDFFFYKFDL-ISFSKSRIKKFRVNIFFQSVCHSVNSSLLN 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,012,889
Number of Sequences: 27780
Number of extensions: 106171
Number of successful extensions: 239
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)