Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N16
         (304 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   2.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   7.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   7.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 188 FVMGNLRNGWTDCDGRLLSDSCSYF 262
           F++  LRN   +C+ +  S+ C  F
Sbjct: 96  FIVDRLRNDLFECENKEKSNVCLKF 120


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 91  LKSKYYFFTQ 120
           +K  YYFFTQ
Sbjct: 472 MKVYYYFFTQ 481


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 91  LKSKYYFFTQ 120
           +K  YYFFTQ
Sbjct: 472 MKVYYYFFTQ 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,016
Number of Sequences: 438
Number of extensions: 1431
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)