Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N15
(303 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 79 1e-16
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 75 3e-15
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 70 7e-14
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 27 0.80
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 26 1.4
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 3.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 4.3
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy... 23 7.5
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 23 7.5
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 23 9.9
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 79.4 bits (187), Expect = 1e-16
Identities = 36/66 (54%), Positives = 50/66 (75%)
Frame = +2
Query: 20 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 199
S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+ N
Sbjct: 2 SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61
Query: 200 IGSGVG 217
IGSG G
Sbjct: 62 IGSGAG 67
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 74.5 bits (175), Expect = 3e-15
Identities = 34/63 (53%), Positives = 48/63 (76%)
Frame = +2
Query: 20 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 199
S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+ N
Sbjct: 2 SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61
Query: 200 IGS 208
IGS
Sbjct: 62 IGS 64
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 70.1 bits (164), Expect = 7e-14
Identities = 31/63 (49%), Positives = 47/63 (74%)
Frame = +2
Query: 20 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 199
S +ELA Y+ALIL D+ + +T +K+ ++ KA V+VEP W +FAKALEG ++++L+ N
Sbjct: 2 SASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLN 61
Query: 200 IGS 208
IGS
Sbjct: 62 IGS 64
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 0.80
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 145 RPVRLNIYSSRFQYG*DFLTGNGDIVIYQDKGGVNTS 35
+PV L +++F +G +T N D I+ K G+N S
Sbjct: 66 KPVSLPASTTQFTFGKPAVTANNDSDIHLKKRGLNKS 102
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 25.8 bits (54), Expect = 1.4
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +2
Query: 47 SALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 196
S L+L + DV A++ E+IS IL + +W AL G+N++D I+
Sbjct: 119 SILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALTGLNIKDAIS 170
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 3.2
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -1
Query: 216 PTPDPMLVIKSRTLMPSK-AFANRPGQYGSTSTAAAFSMVEIFSPVTATSSS 64
PTP P + ++ +PSK +F G S +T + V ++ SS
Sbjct: 425 PTPAPFSIAAKKSHLPSKLSFPQDGGSLSSATTLQQLPKARVTPNVLSSLSS 476
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.2 bits (50), Expect = 4.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 132 STSTAAAFSMVEIFSPVTATSSSTRI 55
+TST+ ++ I SP + +SSST++
Sbjct: 592 TTSTSVLYTSTPITSPNSTSSSSTQV 617
>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 23.4 bits (48), Expect = 7.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 138 TGLVYLQRPWRASMF 182
TG+VY + PWR + +
Sbjct: 79 TGIVYRETPWRKTTY 93
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 23.4 bits (48), Expect = 7.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 186 SRTLMPSKAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSS 64
S + S N P +GS+S +A S F ++ +SS
Sbjct: 230 SNSFTGSNPVQNNPSSFGSSSFGSATSGPSAFGGISQPNSS 270
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 23.0 bits (47), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 214 NSRPDVGY*ITNIDAL 167
N RPD+G+ + N AL
Sbjct: 1181 NERPDIGFWVANTHAL 1196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 886,214
Number of Sequences: 5004
Number of extensions: 14366
Number of successful extensions: 49
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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