Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N15
         (303 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    82   7e-17
05_03_0090 - 8330283-8330831                                           27   2.8  
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201...    26   4.9  
02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805     26   4.9  
08_01_0977 - 9839362-9839524,9839656-9839744                           25   8.6  
07_03_0587 + 19708841-19709282,19709693-19709883,19710429-197105...    25   8.6  
03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435     25   8.6  
01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799...    25   8.6  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 82.2 bits (194), Expect = 7e-17
 Identities = 38/66 (57%), Positives = 50/66 (75%)
 Frame = +2

Query: 20  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 199
           S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI +
Sbjct: 2   SSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILS 61

Query: 200 IGSGVG 217
           +GSG G
Sbjct: 62  VGSGGG 67


>05_03_0090 - 8330283-8330831
          Length = 182

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 72  MSPLPVRKSQPY*KRLL*MLSRTGLVYLQRPWRA 173
           +SPL  R+S P     +    + GLV + +PWR+
Sbjct: 122 VSPLQGRRSAPVGHLAIRQADKVGLVLVTQPWRS 155


>07_03_0537 - 19218461-19218982,19219482-19219868,19219993-19220154,
            19220464-19221117,19221233-19221277,19223300-19223845,
            19223930-19224307,19224642-19225313,19225373-19225456
          Length = 1149

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 144  GQYGSTSTAAAFSMVEIFSPVTATSSS 64
            G +G T+ AAA +  ++F+P T   +S
Sbjct: 942  GDHGHTADAAAAAAADVFTPATMARAS 968


>02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805
          Length = 456

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 143 ASTAQHLQQPLSVWLRFSXXXXXXXHLPG*GRSKHKLIQLLMPFKC 6
           A  + + Q PL VWL  S        LP  G +  +  +L + +KC
Sbjct: 162 ADISVYPQTPLKVWLDRSFTYNLHEFLPEDGGNGREYYRLALGYKC 207


>08_01_0977 - 9839362-9839524,9839656-9839744
          Length = 83

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 56  ILVDDDVAVTGEKISTILKAAAVDVEP 136
           IL  +  A  GE  ST  + AAVDVEP
Sbjct: 44  ILNREAAAAAGEAGSTTREEAAVDVEP 70


>07_03_0587 +
           19708841-19709282,19709693-19709883,19710429-19710568,
           19710955-19711380,19711540-19712685,19712805-19712934,
           19713257-19713492,19713575-19713710,19713793-19713869,
           19714692-19714798,19714896-19714996
          Length = 1043

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 20  SKAELACVYSALILVDDDVAVTG 88
           S ++  CV S+ +++DDD+ + G
Sbjct: 544 SLSQCLCVRSSSVIIDDDLVIVG 566


>03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435
          Length = 415

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 29  ELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 175
           +L  V + + +VD  +  T +++     I KA    V+ + PGL AKA  GI
Sbjct: 161 KLPVVTAKITMVDLPLGATEDRVCGTIDIEKALTDGVKAFEPGLLAKANRGI 212


>01_06_1440 +
           37378121-37378958,37379344-37379494,37379567-37379936,
           37380021-37380431,37380522-37380820,37380897-37381155,
           37381248-37381497,37381744-37381875,37381936-37382208,
           37383023-37383267
          Length = 1075

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 210 PDPMLVIKSRTLMPSKAFANRPGQYGSTSTAAAFS 106
           P P   I     +PS AFA   G   STS+A AF+
Sbjct: 851 PRPTAPISHGPRLPSSAFAGTTG--ASTSSAGAFA 883


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,393,031
Number of Sequences: 37544
Number of extensions: 115114
Number of successful extensions: 247
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)