Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N15
(303 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 109 3e-25
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 106 3e-24
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 29 0.85
AL032643-6|CAA21657.1| 538|Caenorhabditis elegans Hypothetical ... 28 1.1
Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonin... 26 4.5
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 26 4.5
AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical ... 26 4.5
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 26 4.5
Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical pr... 26 6.0
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 25 7.9
U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical pr... 25 7.9
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 109 bits (263), Expect = 3e-25
Identities = 49/68 (72%), Positives = 61/68 (89%)
Frame = +2
Query: 14 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 193
MAS ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60
Query: 194 TNIGSGVG 217
T++ SG G
Sbjct: 61 TSVSSGAG 68
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 106 bits (254), Expect = 3e-24
Identities = 48/68 (70%), Positives = 60/68 (88%)
Frame = +2
Query: 14 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 193
MAS ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60
Query: 194 TNIGSGVG 217
T++ SG G
Sbjct: 61 TSVSSGAG 68
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 28.7 bits (61), Expect = 0.85
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 38 CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 208
C ++ L + DDD +T + + +L+ V PG+ A G NV + IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325
>AL032643-6|CAA21657.1| 538|Caenorhabditis elegans Hypothetical
protein Y54E5A.4 protein.
Length = 538
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 138 YGSTSTAAAFSMVEIFSPVTATSSSTRIRAE*TQANSAF 22
+GST+T AFS +F T+T++S+ T S F
Sbjct: 471 FGSTATKPAFSGGSLFGATTSTATSSAAATTTTPTTSLF 509
>Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 856
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 210 PDPMLVIKSRTLMPSKAFANRPGQYGSTSTAAAFSMV---EIFSPVTATSSSTRIRAE*T 40
P+P V+ + PS ANR + TS A MV ++ S + T+++T I T
Sbjct: 473 PNPTFVVCGSSTKPSPNNANRVRRSTITSPADTQDMVAADQMLSNLDPTTTTTTIPKSAT 532
Query: 39 QAN 31
AN
Sbjct: 533 TAN 535
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 168 SKAFANRPGQYGSTSTAAAFSMVEIFSPVTATS 70
S+ + G+ GS +AAA S VEI P +TS
Sbjct: 50 SRKKGGKGGKKGSKKSAAAASKVEIPDPYNSTS 82
>AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical
protein Y60A3A.1 protein.
Length = 856
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 210 PDPMLVIKSRTLMPSKAFANRPGQYGSTSTAAAFSMV---EIFSPVTATSSSTRIRAE*T 40
P+P V+ + PS ANR + TS A MV ++ S + T+++T I T
Sbjct: 473 PNPTFVVCGSSTKPSPNNANRVRRSTITSPADTQDMVAADQMLSNLDPTTTTTTIPKSAT 532
Query: 39 QAN 31
AN
Sbjct: 533 TAN 535
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 168 SKAFANRPGQYGSTSTAAAFSMVEIFSPVTATS 70
S+ + G+ GS +AAA S VEI P +TS
Sbjct: 50 SRKKGGKGGKKGSKKSAAAASKVEIPDPYNSTS 82
>Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical
protein C01G10.7 protein.
Length = 324
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 14 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 139
M K + S ++ ++D VA+T + + + AAA+D PY
Sbjct: 38 MLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -1
Query: 216 PTPDPMLVIKSRTLMPSKAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSST 61
PTP P + P+ A G G++ TA A +PV TSS+T
Sbjct: 490 PTPVPTTT-NTPPANPTTATPTTVGTIGTSPTAPANLTTPTTAPVNPTSSTT 540
>U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical
protein T19D12.10 protein.
Length = 455
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 95 ISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 208
I+T+L AV Y+P + A+ ++G L ++IGS
Sbjct: 106 IATLLMPLAVSFG-YFPVIIARVIQGFGASILFSSIGS 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,967,916
Number of Sequences: 27780
Number of extensions: 83472
Number of successful extensions: 222
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -