Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N14
         (265 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0623 - 4998236-4999606                                           27   2.1  
04_04_1460 + 33764106-33764303,33764675-33766201                       26   4.8  
04_01_0445 + 5812277-5813893                                           25   8.3  

>11_01_0623 - 4998236-4999606
          Length = 456

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 43  FLFSYIILTSFFYRYNGDSHHQDWFLGSWFLDKFNHRSRSLWCKNRP 183
           FL S  ++T  F+RY   + H+D+F GS  +++    +   +  N P
Sbjct: 203 FLDSNRVMTLSFHRYGKITPHKDFFPGSGAINEIGDGAGEHYSVNVP 249


>04_04_1460 + 33764106-33764303,33764675-33766201
          Length = 574

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 19  YYIIYSYRFL-FSYIILTSFFYRYNGD 96
           YY +  +  + F Y ++ S+FYRY G+
Sbjct: 528 YYAMAVFAAINFVYFLVCSYFYRYKGE 554


>04_01_0445 + 5812277-5813893
          Length = 538

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 71  VFFIDIMGIVITRTG--FLVLGFLINLTTDLGH 163
           VFFIDI+G  + + G  F +  F++ L     H
Sbjct: 361 VFFIDIIGRFVIQLGGFFFMTAFMLGLAVPYHH 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,950,073
Number of Sequences: 37544
Number of extensions: 102633
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)