Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N14
         (265 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X54134-1|CAA38069.1|  700|Homo sapiens protein-tyrosine phosphat...    28   4.7  
BC050062-1|AAH50062.1|  700|Homo sapiens PTPRE protein protein.        28   4.7  
AL390236-6|CAH73174.1|  642|Homo sapiens protein tyrosine phosph...    28   4.7  
AL390236-5|CAH73173.1|  700|Homo sapiens protein tyrosine phosph...    28   4.7  
AJ430580-1|CAD23182.1|  536|Homo sapiens tyrosine phosphatase ep...    28   4.7  
AJ315969-1|CAC86583.1|  642|Homo sapiens tyrosine phosphatase ep...    28   4.7  

>X54134-1|CAA38069.1|  700|Homo sapiens protein-tyrosine phosphatase
           protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 234 QLPYFCF--KLISQMRWIFWTILA-PE*PRSVVKFIKKPRTKKPV 109
           QLP  C   +L+SQ+ +  W     P  P  ++KF+KK +T  PV
Sbjct: 282 QLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPV 326


>BC050062-1|AAH50062.1|  700|Homo sapiens PTPRE protein protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 234 QLPYFCF--KLISQMRWIFWTILA-PE*PRSVVKFIKKPRTKKPV 109
           QLP  C   +L+SQ+ +  W     P  P  ++KF+KK +T  PV
Sbjct: 282 QLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPV 326


>AL390236-6|CAH73174.1|  642|Homo sapiens protein tyrosine
           phosphatase, receptor type, E protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 234 QLPYFCF--KLISQMRWIFWTILA-PE*PRSVVKFIKKPRTKKPV 109
           QLP  C   +L+SQ+ +  W     P  P  ++KF+KK +T  PV
Sbjct: 224 QLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPV 268


>AL390236-5|CAH73173.1|  700|Homo sapiens protein tyrosine
           phosphatase, receptor type, E protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 234 QLPYFCF--KLISQMRWIFWTILA-PE*PRSVVKFIKKPRTKKPV 109
           QLP  C   +L+SQ+ +  W     P  P  ++KF+KK +T  PV
Sbjct: 282 QLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPV 326


>AJ430580-1|CAD23182.1|  536|Homo sapiens tyrosine phosphatase
           epsilon PD1 protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 234 QLPYFCF--KLISQMRWIFWTILA-PE*PRSVVKFIKKPRTKKPV 109
           QLP  C   +L+SQ+ +  W     P  P  ++KF+KK +T  PV
Sbjct: 224 QLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPV 268


>AJ315969-1|CAC86583.1|  642|Homo sapiens tyrosine phosphatase
           epsilon protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 234 QLPYFCF--KLISQMRWIFWTILA-PE*PRSVVKFIKKPRTKKPV 109
           QLP  C   +L+SQ+ +  W     P  P  ++KF+KK +T  PV
Sbjct: 224 QLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPV 268


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,593,428
Number of Sequences: 237096
Number of extensions: 631887
Number of successful extensions: 1013
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 76,859,062
effective HSP length: 65
effective length of database: 61,447,822
effective search space used: 1351852084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)