Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N11
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    24   4.8  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    24   6.4  

>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 62  SF*AGAIIRS*VKFVVFIVIYLAQVTLVRLWS 157
           +F AG  I + +   +F+V+Y+A     R WS
Sbjct: 480 TFTAGNFIAAYITLPIFLVLYVAHKLWSRNWS 511


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 206 YYRRFFNRKFKYY*IVWHL 262
           YY ++ NRK +Y+  +W++
Sbjct: 187 YYPQYENRKAEYFKAIWNV 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,107,413
Number of Sequences: 5004
Number of extensions: 17666
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)