Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N11
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148...    27   4.2  
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554...    26   5.6  
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    26   7.4  

>04_04_1192 +
           31611804-31612113,31612235-31614058,31614098-31614842,
           31615047-31616835,31617136-31617163,31617343-31617794
          Length = 1715

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 166 ISSRPQSY*SNLC*IYDNKHDKFHLTTNYC 77
           IS R     ++LC I D+ H   HL  +YC
Sbjct: 185 ISRRINEIATSLCTISDSVHKAIHLEASYC 214


>03_02_0784 -
           11154395-11154888,11155284-11155360,11155447-11155497,
           11155599-11155672,11156127-11156215,11156533-11156618,
           11157570-11157669,11158540-11158622,11158776-11159194
          Length = 490

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -3

Query: 100 FHLTTNYCSGLETIAE 53
           +HL TN+C+ L+T+AE
Sbjct: 183 WHLATNFCTLLDTLAE 198


>03_01_0423 +
           3240224-3240394,3241464-3241628,3242322-3242339,
           3242494-3242836,3244138-3248540,3248928-3249107,
           3249108-3250892,3251055-3252173
          Length = 2727

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 273 TVFLSISNC*CCCNG 317
           T   ++S C CCCNG
Sbjct: 38  TTTTTVSTCPCCCNG 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,696,322
Number of Sequences: 37544
Number of extensions: 95658
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)