Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N11
         (318 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006607-7|AAL00855.1|  789|Caenorhabditis elegans Hypothetical ...    27   2.2  
Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    26   5.1  
AF077536-11|AAK31413.1|  217|Caenorhabditis elegans Hypothetical...    26   5.1  
Z93383-12|CAB07628.2|  283|Caenorhabditis elegans Hypothetical p...    26   6.8  
AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical...    25   8.9  

>AC006607-7|AAL00855.1|  789|Caenorhabditis elegans Hypothetical
           protein C09E7.9 protein.
          Length = 789

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 112 KHDKFHLTTNYCSGLETIAEP 50
           KHD +HL T+Y + LET  +P
Sbjct: 66  KHDTWHLVTDYVNILETRLKP 86


>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 97  EICRVYCHIFSTSYFSKIVVVNLLFI 174
           E C +YC I   SY   ++  N+L +
Sbjct: 180 ENCSIYCDILKNSYVGLLIFQNILLL 205


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 100 ICRVYCHIFSTSYFSKIVVVNLLFI 174
           I +++C +   SYF  I+VV LLF+
Sbjct: 52  IVQLFCRMVKFSYFIFIIVVVLLFL 76


>AF077536-11|AAK31413.1|  217|Caenorhabditis elegans Hypothetical
           protein C16A11.8 protein.
          Length = 217

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 180 VCSILICYNIIDVFLIVNLNIIE*C 254
           +CS+L+C+ I++V  + N++  E C
Sbjct: 6   LCSVLLCFCIVNVKAVFNIDNDESC 30


>Z93383-12|CAB07628.2|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.7a protein.
          Length = 283

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 99  NLSCLLSYI*HKLL**DCGRELIIYR*VCSILICYNIIDVFLIVNLNI 242
           +L C + Y+ + +    C +  I +R   SI  C  IIDVFL ++++I
Sbjct: 18  SLCCTMIYLLYAVF---CSKR-IAFRPSLSIFYCRFIIDVFLTLSVSI 61


>AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical
           protein K09D9.3 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 180 VCSILICYNIIDVFLIVNL 236
           + S L CYN++ V L + L
Sbjct: 31  IISFLFCYNVVSVLLFIGL 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,105,357
Number of Sequences: 27780
Number of extensions: 96042
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)