Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N07
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    42   2e-04
Z70035-12|CAB76726.1|  150|Caenorhabditis elegans Hypothetical p...    34   0.046
Z70035-8|CAA93868.2|  446|Caenorhabditis elegans Hypothetical pr...    33   0.11 
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    31   0.25 
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    31   0.25 
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr...    31   0.33 
AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical ...    29   1.3  
AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z70035-6|CAA93866.1|  444|Caenorhabditis elegans Hypothetical pr...    28   2.3  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    28   3.0  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    28   3.0  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    28   3.0  
AL110490-9|CAB54453.2|  607|Caenorhabditis elegans Hypothetical ...    27   5.3  
AF039650-1|AAC14022.3|  607|Caenorhabditis elegans acetylcholine...    27   5.3  
AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z70035-7|CAA93867.1|  369|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AL110490-8|CAB54444.2|  602|Caenorhabditis elegans Hypothetical ...    26   9.2  
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    26   9.2  
AF025379-1|AAC14017.1|  602|Caenorhabditis elegans acetylcholine...    26   9.2  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    26   9.2  

>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +2

Query: 131 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRA-HA 307
           CY+ + +  R+ +A+ +P D  P L  CTH+L+    + AD         +L  D A   
Sbjct: 57  CYFTNWAQYRQGRAKFVPEDYTPGL--CTHILFAFGWMNADYTVRAYDPADLPNDWAGEG 114

Query: 308 NYRAIANLKRQFPQLRVFLTVGG 376
            YR +  LK    QL+  L+ GG
Sbjct: 115 MYRRVNKLKVTDTQLKTLLSFGG 137


>Z70035-12|CAB76726.1|  150|Caenorhabditis elegans Hypothetical
           protein R09D1.14 protein.
          Length = 150

 Score = 33.9 bits (74), Expect = 0.046
 Identities = 26/104 (25%), Positives = 56/104 (53%)
 Frame = +2

Query: 89  TNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMV 268
           + +PA+P    +++ YY +      +Q  ++ +D    +S  TH ++    I +D    +
Sbjct: 33  STYPATPGCNKRIIGYYFA------TQTSVITSD---QVSNLTHAVFAFVNITSDG--QL 81

Query: 269 SLNENLDIDRAHANYRAIANLKRQFPQLRVFLTVGGDDDTEDTK 400
            ++ +L  +R   N   IA  K+Q PQ++V +++GG+D++ + K
Sbjct: 82  QIDGDLAKNR-FTNLIEIA--KQQTPQVKVMISIGGNDNSNNFK 122


>Z70035-8|CAA93868.2|  446|Caenorhabditis elegans Hypothetical
           protein R09D1.8 protein.
          Length = 446

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 23/105 (21%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
 Frame = +2

Query: 89  TNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMV 268
           + +PA+P    +++ YY +      +Q  ++  D    +S  TH ++    + +D +  +
Sbjct: 75  STYPATPGCNKRIIGYYFA------TQTSVITRD---QVSKLTHAVFAFVNMTSDGHLQI 125

Query: 269 SLNENLDIDRAHANYRAIANL-KRQFPQLRVFLTVGGDDDTEDTK 400
                 D D A   +  +  + K+Q PQ++V +++GG+D++ + K
Sbjct: 126 ------DGDLAKNRFTNLIEIAKQQTPQVKVMISIGGNDNSNNFK 164


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +2

Query: 209 FCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAIANLKRQFPQLRVFLTVGGDDDT 388
           F  +L  K  GI A  YK+VSLN  L++   +    A AN  R+     +F  +  DDD 
Sbjct: 511 FSRYLHTKQRGIPAKVYKVVSLNSCLEVCAGNPTC-AGANYNRRLGDCTLFDAI--DDDA 567

Query: 389 E 391
           E
Sbjct: 568 E 568


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +2

Query: 209 FCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAIANLKRQFPQLRVFLTVGGDDDT 388
           F  +L  K  GI A  YK+VSLN  L++   +    A AN  R+     +F  +  DDD 
Sbjct: 507 FSRYLHTKQRGIPAKVYKVVSLNSCLEVCAGNPTC-AGANYNRRLGDCTLFDAI--DDDA 563

Query: 389 E 391
           E
Sbjct: 564 E 564


>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
           protein C25A8.4 protein.
          Length = 1067

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +2

Query: 167 QARMLPTDLEPALSFCTHLLYKSAGIQADT----YKMVSLNENLDIDRAHANYRAIANLK 334
           + R+ P  L+  ++ CTHL+Y S  I  DT    Y +  +    DID    N R    L+
Sbjct: 37  KTRLSPNLLQN-ITTCTHLVYGSIPIDRDTGYPQYSVSDVESGYDID----NIRTFMRLR 91

Query: 335 RQFPQLRVFLTVGGDDDTED 394
           +  P  ++ + V      ED
Sbjct: 92  KYHPNAKLLMGVVRTKPFED 111


>AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical
           protein Y73F8A.9 protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 254 CQLGCRQICTADGCRTKEQAPSP 186
           CQ  C+Q C    C T+  AP+P
Sbjct: 103 CQSSCQQTCQTSSCYTQIAAPAP 125


>AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical
           protein Y73F8A.8 protein.
          Length = 420

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 254 CQLGCRQICTADGCRTKEQAPSP 186
           CQ  C+Q C    C T+  AP+P
Sbjct: 104 CQSSCQQTCQTSSCYTQIAAPAP 126


>Z70035-6|CAA93866.1|  444|Caenorhabditis elegans Hypothetical
           protein R09D1.6 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 284 LDIDRAHANYRAIANL-KRQFPQLRVFLTVGGDDDTEDTK 400
           +D D A   +  +  + K+Q PQ++V +++GG+D++ + K
Sbjct: 123 IDGDLAKNRFTNLIEIAKQQTPQVKVMISIGGNDNSNNFK 162


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 275  NENLDIDRAHANYRAIANLKRQFPQLRVFLTVGGDDDTEDTKKY 406
            N   D+D AH + R++ + + Q+   R  L     +   DT KY
Sbjct: 1780 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKY 1823


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 275  NENLDIDRAHANYRAIANLKRQFPQLRVFLTVGGDDDTEDTKKY 406
            N   D+D AH + R++ + + Q+   R  L     +   DT KY
Sbjct: 1853 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKY 1896


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 275  NENLDIDRAHANYRAIANLKRQFPQLRVFLTVGGDDDTEDTKKY 406
            N   D+D AH + R++ + + Q+   R  L     +   DT KY
Sbjct: 1853 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKY 1896


>AL110490-9|CAB54453.2|  607|Caenorhabditis elegans Hypothetical
           protein Y48B6A.8 protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 276 LSETILYVSAWMPADLYS 223
           +SE  LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133


>AF039650-1|AAC14022.3|  607|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 276 LSETILYVSAWMPADLYS 223
           +SE  LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133


>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 230 CTADGCRTKEQAPSP*AAYVLEIL*YSSCCHSSRGLCFGY 111
           C+ + C     AP    +Y      YSSCC+S+   C GY
Sbjct: 65  CSCNPCNGGGCAPR--CSYCPNNFGYSSCCNSNNFSCCGY 102


>Z70035-7|CAA93867.1|  369|Caenorhabditis elegans Hypothetical
           protein R09D1.7 protein.
          Length = 369

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 332 KRQFPQLRVFLTVGGDDDTEDTKK 403
           K+Q P ++V +++GGDD++ +  K
Sbjct: 65  KQQTPPVKVMISIGGDDNSNNFYK 88


>AL110490-8|CAB54444.2|  602|Caenorhabditis elegans Hypothetical
           protein Y48B6A.7 protein.
          Length = 602

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 276 LSETILYVSAWMPADLYS 223
           +SE  LY++ W PAD Y+
Sbjct: 111 ISEDCLYLNIWAPADAYN 128


>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
           protein 2 protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 111 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 233
           +AK    AT  A+    +SE L+H   + TW    R+ P+  +N
Sbjct: 56  IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99


>AF025379-1|AAC14017.1|  602|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 602

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 276 LSETILYVSAWMPADLYS 223
           +SE  LY++ W PAD Y+
Sbjct: 111 ISEDCLYLNIWAPADAYN 128


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
           protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 111 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 233
           +AK    AT  A+    +SE L+H   + TW    R+ P+  +N
Sbjct: 56  IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,590,603
Number of Sequences: 27780
Number of extensions: 157999
Number of successful extensions: 447
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)