Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N05
(293 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 128 2e-31
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 126 7e-31
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 0.76
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 1.8
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 25 1.8
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 25 3.1
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 3.1
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 4.0
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 24 4.0
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 24 4.0
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 24 4.0
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 24 4.0
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 24 5.3
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 23 7.1
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 23 7.1
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 23 7.1
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 23 7.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 23 9.3
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,... 23 9.3
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 23 9.3
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 23 9.3
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 23 9.3
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 128 bits (309), Expect = 2e-31
Identities = 58/90 (64%), Positives = 69/90 (76%)
Frame = +1
Query: 22 GGADVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVDGHLVVNGKKIAVFSERDPHAI 201
G VVA+NDPFI LDYM Y+F+YDSTHGRF+G+VE G LV++G I V +ERDP I
Sbjct: 26 GKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKGGKLVIDGHSIDVHNERDPANI 85
Query: 202 PWGQAGAEYVVESTGVFTTTDKASAHLVGG 291
W +GAEYV+ESTGVFTT + ASAHL GG
Sbjct: 86 KWSASGAEYVIESTGVFTTKETASAHLKGG 115
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 126 bits (304), Expect = 7e-31
Identities = 57/86 (66%), Positives = 68/86 (79%)
Frame = +1
Query: 34 VVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVDGHLVVNGKKIAVFSERDPHAIPWGQ 213
VVAINDPFI L+YM Y+F+YDSTHGRF G+VE DG LV++G I V +ERDP I W
Sbjct: 30 VVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKDGKLVIDGNAIDVHNERDPADIKWST 89
Query: 214 AGAEYVVESTGVFTTTDKASAHLVGG 291
+GA+YV+ESTGVFTT + ASAHL GG
Sbjct: 90 SGADYVIESTGVFTTQETASAHLKGG 115
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 0.76
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 162 LSVYDEVSIYGLNGTLETTVSRIILEKV 79
L + V++ G NG +TT+ ++ILEKV
Sbjct: 617 LDLKSRVALVGPNGAGKTTLIKLILEKV 644
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.4 bits (53), Expect = 1.8
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = -3
Query: 237 FNNVFSTSLTPWNSMGIPLREHSYLLSVYDEVSIYGLNGTLETTVSRIILEKVDHVVKTN 58
+N + +NS+ R S L + E I+ ++ TLE+ S + DHV K
Sbjct: 684 YNTIMEVWNIKYNSLNALARLLSALYKFHPEFCIHVIDDTLESLFSAV--NNSDHVEK-Q 740
Query: 57 ERIIDSNNIGTPSCRIH 7
+R+ + I + C IH
Sbjct: 741 KRLAQARFI-SELCVIH 756
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -2
Query: 193 GDPSQRTQL--SSFRLRRGVHLRPQRY 119
G P++R L +F +RRGVHL+ +Y
Sbjct: 163 GIPTKRKDLFPCNFFIRRGVHLKVNKY 189
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 264 ISGCEHTG*FNNVFSTSLTPWNSMGIPL 181
+S H+G F T L+PWN IPL
Sbjct: 445 VSSSRHSGIFAT--PTFLSPWNIKNIPL 470
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 222 STSLTPWNSMGIPLREHSYLLSVYDEVSI 136
S S +S +PLREH L +VY +V +
Sbjct: 50 SLSSVDVSSPSLPLREHLPLKNVYSQVPL 78
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 24.2 bits (50), Expect = 4.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 198 SMGIPLREHSYLLSVYDEVSIY 133
S G+PL + LLS+Y+ IY
Sbjct: 648 SKGVPLLVRNVLLSIYENKIIY 669
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.2 bits (50), Expect = 4.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 188 SLSENTAIFFPFTTRCPSTASTV 120
++S ++ I PFT+ PST ST+
Sbjct: 140 NVSNSSQILSPFTSLLPSTLSTL 162
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.2 bits (50), Expect = 4.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 157 GKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTT 261
G +I+ S RD I + Q+G Y+V G+ +TT
Sbjct: 90 GYQISFTSIRDDSVI-YAQSGTFYIVGGEGISSTT 123
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 24.2 bits (50), Expect = 4.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 263 SVVVNTPVDSTTYS 222
S +VNTP DSTTY+
Sbjct: 87 SSLVNTPRDSTTYA 100
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 24.2 bits (50), Expect = 4.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 31 DVVAINDPFIGLDYMVYLFQY 93
D++ + P++ DY V LF+Y
Sbjct: 677 DLLIVISPYLNQDYAVTLFEY 697
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 23.8 bits (49), Expect = 5.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 72 HGLPFPV*FDSRSFQGY 122
H PFPV D F+GY
Sbjct: 46 HDKPFPVKLDDSVFEGY 62
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 23.4 bits (48), Expect = 7.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 222 STSLTPWNSMGIPLREHSYLLS 157
S S TP++ +PL +SY LS
Sbjct: 33 SASSTPYSPQQVPLTHNSYPLS 54
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 23.4 bits (48), Expect = 7.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -1
Query: 263 SVVVNTPVDSTTYSAPA*PHGIAWGS 186
+VV+ + + Y+ P+ PH I W +
Sbjct: 273 AVVIPVTIKPSIYTEPSLPHHIDWNN 298
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 23.4 bits (48), Expect = 7.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -1
Query: 290 PPTK*AEALSVVVNTPVDSTTYSAPA*PH 204
PP + + + + N PVD+ +P PH
Sbjct: 123 PPKRVSLGIPSISNPPVDTVISDSPTSPH 151
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 23.4 bits (48), Expect = 7.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 288 THQVSRSFISGCEHTG*FNNVFSTS 214
THQ S + EH+ F +VF TS
Sbjct: 81 THQREASPVKNIEHSESFPSVFGTS 105
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 23.0 bits (47), Expect = 9.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 205 WGQAGAEYVVESTGVFTT 258
WG++G VVE TG + +
Sbjct: 230 WGESGEPVVVEWTGCYNS 247
>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 546
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 55 FIGLDYMVYLFQYDSTHGRFKGTVEAVDGH 144
FIG +++Y+FQY G + ++ H
Sbjct: 350 FIGSSFLLYVFQYAYPGGLALTRLYEIENH 379
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 23.0 bits (47), Expect = 9.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 124 VEAVDGHLVVNGKKIAVFSERDPHAIP 204
VEAVD +L + +++A+ ++ H IP
Sbjct: 26 VEAVDKYLRNSFRELALHTQLSKHTIP 52
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 23.0 bits (47), Expect = 9.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 179 LRGIPMLFHGVRLVLNTLLNQPVCSQPLIKLLL 277
+RG+ +L G RLV +T P+ ++ ++ +L
Sbjct: 276 MRGLQLLEKGGRLVYSTCSLNPIENEAVVSAVL 308
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 23.0 bits (47), Expect = 9.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 178 SERDPHAIPWGQAGAEYVVESTGVFTT 258
S+ PHA+ WG A+++ VF T
Sbjct: 256 SDTSPHALGWG--SAQFIGLGFSVFAT 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,286,575
Number of Sequences: 5004
Number of extensions: 24054
Number of successful extensions: 79
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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