Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N05
(293 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 133 2e-32
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 131 1e-31
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 104 1e-23
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 87 3e-18
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 83 3e-17
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 75 1e-14
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 68 2e-12
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 29 0.86
04_04_1057 - 30451759-30452523,30452627-30452701,30453180-304532... 28 1.5
06_03_0112 + 16781770-16782020,16782032-16782764 27 2.6
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073... 27 3.5
11_03_0061 - 9409470-9409488,9409788-9410265,9410311-9410614 26 4.6
09_01_0101 - 1558889-1558989,1559105-1559214,1559300-1559396,156... 26 6.1
01_04_0027 + 15216424-15216672 26 6.1
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 25 8.0
02_01_0490 + 3541056-3542276 25 8.0
01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932 25 8.0
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 133 bits (322), Expect = 2e-32
Identities = 62/92 (67%), Positives = 73/92 (79%), Gaps = 1/92 (1%)
Frame = +1
Query: 19 RGGADVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVD-GHLVVNGKKIAVFSERDPH 195
R +VVA+NDPFI YM Y+F+YDSTHG FKGT++ VD L +NGKKI+V S+RDP
Sbjct: 101 RDDIEVVAVNDPFIDAKYMAYMFKYDSTHGPFKGTIKVVDESTLEINGKKISVTSKRDPS 160
Query: 196 AIPWGQAGAEYVVESTGVFTTTDKASAHLVGG 291
IPWG GAEYVVES+GVFTTT+KASAHL GG
Sbjct: 161 DIPWGNFGAEYVVESSGVFTTTEKASAHLKGG 192
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 131 bits (316), Expect = 1e-31
Identities = 59/94 (62%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Frame = +1
Query: 13 SARGGADVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVDGH-LVVNGKKIAVFSERD 189
++R +VVA+NDPFI YM Y+F+YDSTHG FKG+++ VD L +NGKK+ + S+RD
Sbjct: 158 TSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGPFKGSIKVVDDSTLEINGKKVTITSKRD 217
Query: 190 PHAIPWGQAGAEYVVESTGVFTTTDKASAHLVGG 291
P IPWG GAEYVVES+GVFTTT+KASAHL GG
Sbjct: 218 PADIPWGNFGAEYVVESSGVFTTTEKASAHLKGG 251
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 104 bits (249), Expect = 1e-23
Identities = 49/88 (55%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
Frame = +1
Query: 31 DVVAINDPFIGLDYMVYLFQYDSTHGRFKG-TVEAVDGHLVVNG-KKIAVFSERDPHAIP 204
++VA+NDPFI +YM Y+F+YD+ HG++K V+ D ++ G K++AVF R+P IP
Sbjct: 34 ELVAVNDPFITTEYMTYMFKYDTVHGQWKHHEVKVKDSKTLIFGTKEVAVFGCRNPEEIP 93
Query: 205 WGQAGAEYVVESTGVFTTTDKASAHLVG 288
W AGAEYVVESTGVFT DKA+AHL G
Sbjct: 94 WAAAGAEYVVESTGVFTDKDKAAAHLKG 121
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 86.6 bits (205), Expect = 3e-18
Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 25/112 (22%)
Frame = +1
Query: 31 DVVAINDPFIGLDYMVYLFQYDSTHGRFKGT-VEAVDGHLVVNGKK-IAVFS-------- 180
++VA+NDPFI DYM Y+F+YD+ HG++K + ++ D ++ G+K + VF
Sbjct: 29 ELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGISLDESNL 88
Query: 181 ---------------ERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHLVGG 291
ER+P IPW +AGAEYVVESTGVFT +KA+AHL GG
Sbjct: 89 FMVASVELMFDPVQFERNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGG 140
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 83.4 bits (197), Expect = 3e-17
Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Frame = +1
Query: 73 MVYLFQYDSTHGRFKG-TVEAVDGHLVVNGKK-IAVFSERDPHAIPWGQAGAEYVVESTG 246
+ Y+F+YD+ HG++K V+ D ++ G+K + VF R+P IPWG+ GAE+VVESTG
Sbjct: 91 VTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVTVFGCRNPEEIPWGETGAEFVVESTG 150
Query: 247 VFTTTDKASAHLVGG 291
VFT DKA+AHL GG
Sbjct: 151 VFTDKDKAAAHLKGG 165
Score = 29.1 bits (62), Expect = 0.65
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 31 DVVAINDPFIGLDYMVYLF 87
++VA+NDPFI DYM+ F
Sbjct: 29 ELVAVNDPFITTDYMICEF 47
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 74.5 bits (175), Expect = 1e-14
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = +1
Query: 31 DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAV-DGHLVVNGKKIAVFSERDPHAIPW 207
DV+AIND G+ +L +YDST G F V+ V D + V+GK I V S+R+P +PW
Sbjct: 95 DVIAINDTG-GVKQASHLLKYDSTLGIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPW 153
Query: 208 GQAGAEYVVESTGVFTTTDKASAHLVGG 291
G+ G + V+E TGVF D A H+ G
Sbjct: 154 GELGIDLVIEGTGVFVDRDGAGKHIQAG 181
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 67.7 bits (158), Expect = 2e-12
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +1
Query: 31 DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVDGHLV-VNGKKIAVFSERDPHAIPW 207
+VV +ND G+ +L +YDS G FK V+ VD + V+GK I V S RDP +PW
Sbjct: 105 EVVVVNDSG-GVRNASHLLKYDSMLGTFKADVKIVDDQTISVDGKLIKVVSNRDPLKLPW 163
Query: 208 GQAGAEYVVESTGVFTTTDKASAHLVGG 291
+ G + V+E TGVF A H+ G
Sbjct: 164 AELGIDIVIEGTGVFVDGPGAGKHIQAG 191
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 28.7 bits (61), Expect = 0.86
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 157 GKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDK 267
G K+ D + WG+ E + E G+ T+T+K
Sbjct: 445 GNKVDEMKSGDRQHLWWGKRNVEQITEKLGLLTSTEK 481
>04_04_1057 -
30451759-30452523,30452627-30452701,30453180-30453254,
30453503-30453591,30454058-30454157,30454244-30454388,
30454609-30454658,30455033-30455114,30455200-30455282,
30455360-30455429,30455523-30455632,30455719-30455872,
30456639-30456796,30457338-30457517
Length = 711
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 196 HGDPSQRTQLSSFRLRRGVHLRPQRYP*NDRESNH 92
HG P +T SS+ RRG+ + P YP + H
Sbjct: 590 HGSPLGKTP-SSYSKRRGLPMPPHEYPSQHGQGRH 623
>06_03_0112 + 16781770-16782020,16782032-16782764
Length = 327
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 274 QKLYQWL*THRLIQQRIQHQPDPME*HGDPSQRTQLS 164
Q +Y L RLIQ+++ H D ++ H + R QLS
Sbjct: 157 QGIYYALYIMRLIQRKLGHAGDNLKEHKEDKPRRQLS 193
>10_08_1040 +
22503641-22503681,22503838-22504299,22506952-22507361,
22507484-22507640,22507718-22507937,22508053-22508106,
22508193-22508272,22508359-22508636,22509193-22509515,
22509590-22509853,22510453-22510860
Length = 898
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 129 LNGTLETTVSRIILEKVDHVVKTNERIIDSNNIGTPSCRIHA 4
L T E T+S +++ D V + + D+NN GT SC A
Sbjct: 684 LYSTTEQTISSPLVKGTDAVGANSSSMADANN-GTGSCNASA 724
>11_03_0061 - 9409470-9409488,9409788-9410265,9410311-9410614
Length = 266
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 165 LLSVYDEVSIYGLNGTLETTVSRIILEKV 79
LL VSI GL G +TT++R + EK+
Sbjct: 176 LLQKLQVVSIVGLGGLGKTTLARQVYEKI 204
>09_01_0101 -
1558889-1558989,1559105-1559214,1559300-1559396,
1560462-1560537,1561577-1561666,1561972-1562070
Length = 190
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 31 DVVAINDPFIGLDYMVYLFQYDSTHGRF 114
++VA+ND FI +YMV L + +F
Sbjct: 49 ELVAVNDSFITTEYMVTLDLAKGVYAKF 76
>01_04_0027 + 15216424-15216672
Length = 82
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -3
Query: 165 LLSVYDEVSIYGLNGTLETTVSRIILEKVDHVVKTNERIID 43
++ ++ EV + N L + + I+ H + TN++I+D
Sbjct: 1 MVDLWTEVETHQFNPALSPIMFQCIINPALHGIPTNQKIVD 41
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 277 EQKLYQWL*THRLIQQRIQHQPDPME*HGDPSQRTQLSSFRLRRGVHLRPQRYP 116
EQ+ Q L + + I +P + H DPS +Q R + +L P YP
Sbjct: 78 EQQKTQDLSPEQQDSKTIPMEPIILRSHEDPSSHSQFEVSRPQSETYLLPYSYP 131
>02_01_0490 + 3541056-3542276
Length = 406
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 206 GVRLVLNTLLNQPVCSQPL 262
GVR +LN PVCS+P+
Sbjct: 342 GVRAATPVVLNVPVCSRPV 360
>01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932
Length = 219
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -3
Query: 183 LREHSYLLSVYDEVSIYGLNGTLETTVSRIILEKVDHVVKTNERIIDSN 37
LRE + ++ V+ EV + N + V I+ + TN++++D +
Sbjct: 92 LREAA-MVDVWTEVETHQYNSAISPIVYECIINPAMRGIPTNQKVVDES 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,979,722
Number of Sequences: 37544
Number of extensions: 172683
Number of successful extensions: 429
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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