Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N04
(291 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 29 0.14
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 27 0.42
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 0.74
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 26 0.97
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 25 1.7
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 25 1.7
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 25 2.2
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 25 3.0
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ... 24 5.2
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 24 5.2
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi... 23 6.9
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 23 9.1
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 23 9.1
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 23 9.1
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 29.1 bits (62), Expect = 0.14
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 48 IWIS--TIINMLDKMLYNTVLSQTFSPCGKYLVAGNIYGQLAVFDL 179
IW S T++ L +V S FSP GKYLV+G++ + +++L
Sbjct: 443 IWTSSGTLVEQLHGH-EESVYSVAFSPDGKYLVSGSLDNTIKLWEL 487
Score = 25.4 bits (53), Expect = 1.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 99 VLSQTFSPCGKYLVAGNIYGQLAVFDL 179
V S FSP GKYL G Q+ ++D+
Sbjct: 337 VRSVAFSPDGKYLATGVEDQQIRIWDI 363
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 0.42
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +3
Query: 30 YFILHYIWISTIINMLDKMLYNTVLSQTF 116
++ LH++W+ T + L + ++++SQ F
Sbjct: 341 FYSLHFLWLCTFFHALQCAIISSIVSQWF 369
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.6 bits (56), Expect = 0.74
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 114 FSPCGKYLVAGNIYGQLAVFDL 179
FSP GKYLV G Q+ ++DL
Sbjct: 368 FSPDGKYLVTGTEDRQIKLWDL 389
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 0.97
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 114 FSPCGKYLVAGNIYGQLAVFD 176
+SP GKYL G+ G++ ++D
Sbjct: 487 YSPDGKYLACGDASGKVVLYD 507
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 1.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 21 KLKYFILHYIWISTIINMLDKMLYN 95
K+ +FIL Y +S IN LD+ N
Sbjct: 27 KIDWFILSYCCVSYFINYLDRSSIN 51
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 1.7
Identities = 7/28 (25%), Positives = 19/28 (67%)
Frame = +3
Query: 99 VLSQTFSPCGKYLVAGNIYGQLAVFDLD 182
+ + F+P G L++ ++ G++ ++D+D
Sbjct: 232 IFAVAFNPVGDLLLSADVEGKIKIWDID 259
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 114 FSPCGKYLVAGNIYGQLAVFDLD--RILH 194
+SP G+++V+G+ GQL + + R+ H
Sbjct: 153 YSPNGRFIVSGHQTGQLFLISTETGRLFH 181
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 2.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -1
Query: 156 RKYCRQPNIFHKEKKFEREPYYIT 85
+K+ +P + HK K + R+P+ I+
Sbjct: 54 KKFKEKPKVSHKAKNWVRQPFSIS 77
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 24.6 bits (51), Expect = 3.0
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 70 ICLTKCYIIRFSLKLFLLVENIWLPAIFTVNL---LFLI*IVSYTQSYNV*QM 219
+CL C II FS+ ++L E + + + +L F IV+ + Y++ Q+
Sbjct: 87 MCLRSCTIIYFSMNPYMLCEILNARNVISCSLNTQKFFFIIVAASNVYSIFQL 139
>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 227
Score = 23.8 bits (49), Expect = 5.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 279 PSWIFVRLNLTCGCVLVC*NHLLYV 205
P + F R+ C L+ NH+L+V
Sbjct: 88 PFFSFKRMRFLLACFLIVANHILWV 112
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 23.8 bits (49), Expect = 5.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 96 TVLSQTFSPCGKYLVAGN 149
TV S FSP G+YL +G+
Sbjct: 76 TVTSVRFSPNGQYLASGS 93
>SPBC18E5.05c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 23.4 bits (48), Expect = 6.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 129 FHKEKKFEREPYYITFCQAYL 67
FHK+ E P Y+ C+ +L
Sbjct: 130 FHKDVTLENYPSYLPPCEVFL 150
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 23.0 bits (47), Expect = 9.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 33 FILHYIWISTIIN 71
F+L IWISTI N
Sbjct: 589 FVLGIIWISTIAN 601
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 23.0 bits (47), Expect = 9.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 129 KYLVAGNIYGQLAVFDLDRILH 194
+YL+ G GQ+ VFD+ H
Sbjct: 29 QYLIVGQCSGQVMVFDVSTDNH 50
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 23.0 bits (47), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 99 VLSQTFSPCGKYLVAGNIYGQLAVFD 176
VLS +S YL AG+ G + +FD
Sbjct: 308 VLSLKWSGTDTYLAAGSADGTITLFD 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,341,415
Number of Sequences: 5004
Number of extensions: 26292
Number of successful extensions: 75
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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