Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N04
(291 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954... 31 0.16
11_06_0627 + 25633537-25633884,25635246-25635869 30 0.36
04_03_0240 - 13228046-13228170,13228247-13228307,13229301-132293... 27 3.3
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 26 4.4
10_01_0025 - 328105-328188,328281-328337,328680-328734,328809-32... 26 4.4
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 26 4.4
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883... 26 4.4
04_04_0589 + 26449184-26450500,26452220-26452310,26452428-264525... 26 5.8
06_03_1028 - 27004229-27004566,27005554-27005772,27006254-270063... 25 7.7
>04_03_0103 +
11288977-11290353,11291962-11292075,11294987-11295436,
11295813-11295910,11296023-11296206,11296979-11297068,
11301608-11301727,11301812-11302054,11302715-11302988,
11303237-11303357,11303591-11303849
Length = 1109
Score = 31.1 bits (67), Expect = 0.16
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 182 SYPTPSLITYNK*FQQTKTHPHVRLRRTNIQL 277
SYPTP+ + Q+T+THP+ LRR Q+
Sbjct: 767 SYPTPNYTLQCRDSQRTRTHPYEILRRLGRQI 798
>11_06_0627 + 25633537-25633884,25635246-25635869
Length = 323
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 99 VLSQTFSPCGKYLVAGNIYGQLAVFDLDRI 188
VLS +SP GK L G++ G +AV+D R+
Sbjct: 163 VLSVAWSPDGKLLACGSMDGTIAVYDAVRM 192
>04_03_0240 -
13228046-13228170,13228247-13228307,13229301-13229368,
13229979-13230051,13230130-13230231,13231473-13231592,
13231795-13231913,13231990-13232047,13232152-13232208,
13232719-13232851,13233534-13233591,13234592-13234601,
13239996-13240961
Length = 649
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 114 FSPCGKYLVAGNIYGQLAVFDLDRILHPVL*RITND 221
+ P G +V GN+ G +A+F + R H ++ R +D
Sbjct: 493 YDPIGSIIV-GNLLGMVAIFLIQRNRHALIGRAIDD 527
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 93 NTVLSQTFSPCGKYLVAGNIYGQLAVFD 176
N VL +SP G +LV+G+ G+L ++D
Sbjct: 176 NWVLCIAWSPDGNHLVSGSKSGELILWD 203
>10_01_0025 -
328105-328188,328281-328337,328680-328734,328809-328951,
330772-330909,331010-331120,332621-332684,334179-334378,
334678-334805,335468-335593,335828-335917,336035-336116,
336845-336910
Length = 447
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 93 NTVLSQTFSPCGKYLVAGNIYGQLAVFD 176
N VL +SP G +LV+G+ G+L ++D
Sbjct: 125 NWVLCIAWSPDGNHLVSGSKSGELILWD 152
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 99 VLSQTFSPCGKYLVAGNIYGQLAVFDL 179
VLS SP G+Y+ +G+ G + ++DL
Sbjct: 411 VLSLAMSPDGRYMASGDEDGTIMMWDL 437
>04_04_1596 +
34684943-34686340,34688085-34688175,34688290-34688354,
34688530-34688581,34688747-34688829,34688942-34689035,
34689468-34690051
Length = 788
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 102 LSQTFSPCGKYLVAGNIYGQLAVFDLDRILHPVL*RITNDF-NKPKHIHMSD 254
+S + +P GKY+V + + V+ D HP R D N +H H D
Sbjct: 603 ISASVAPNGKYVVCASEDSHVYVWRHDNTSHPSRSRSAVDVTNSYEHFHCHD 654
>04_04_0589 +
26449184-26450500,26452220-26452310,26452428-26452585,
26452670-26452768,26453296-26453345,26453654-26453705,
26453773-26454058,26454286-26454400,26454938-26455020,
26455381-26455466
Length = 778
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 87 LYNTVLSQTFSPCGKYLVAGNIYGQLAVFDLDRILHPVL 203
L+ V + ++P G+ + G+ G ++D I HP++
Sbjct: 508 LHEMVTAACYTPDGQRALVGSHKGSCHIYDTSGISHPLM 546
>06_03_1028 -
27004229-27004566,27005554-27005772,27006254-27006390,
27007172-27007509
Length = 343
Score = 25.4 bits (53), Expect = 7.7
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 159 DRKYCRQPNIFHKEKKFERE 100
DR++C+Q + FH +F++E
Sbjct: 104 DRRFCQQCSRFHAPSEFDQE 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,775,494
Number of Sequences: 37544
Number of extensions: 136959
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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