Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N04
         (291 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050674-1|AAH50674.1|  341|Homo sapiens THO complex 6 homolog (...    49   3e-06
AK075330-1|BAC11552.1|  296|Homo sapiens protein ( Homo sapiens ...    49   3e-06
BC003118-1|AAH03118.1|  317|Homo sapiens THOC6 protein protein.        47   1e-05
BC063041-1|AAH63041.1| 1129|Homo sapiens WD repeat and HMG-box D...    35   0.041
BC043349-1|AAH43349.1|  612|Homo sapiens WDHD1 protein protein.        35   0.041
BC005040-1|AAH05040.1|  613|Homo sapiens Unknown (protein for IM...    35   0.041
BC000622-1|AAH00622.1|  613|Homo sapiens WDHD1 protein protein.        35   0.041
AJ006266-1|CAA06932.1| 1129|Homo sapiens AND-1 protein protein.        35   0.041
CR457333-1|CAG33614.1|  305|Homo sapiens REC14 protein.                32   0.38 
BC010080-1|AAH10080.1|  305|Homo sapiens WD repeat domain 61 pro...    32   0.38 
AK024754-1|BAB14986.1|  305|Homo sapiens protein ( Homo sapiens ...    32   0.38 
AF309553-1|AAG31639.1|  305|Homo sapiens meiotic recombination p...    32   0.38 
AF100786-1|AAP97225.1|  305|Homo sapiens G protein beta subunit-...    32   0.38 
AF127799-1|AAP97249.1|  305|Homo sapiens G protein beta subunit-...    29   3.6  
AK001301-1|BAA91610.1|  385|Homo sapiens protein ( Homo sapiens ...    28   4.7  
AB037797-1|BAA92614.1|  437|Homo sapiens KIAA1376 protein protein.     28   4.7  
BC006351-1|AAH06351.1|  366|Homo sapiens WDR74 protein protein.        28   6.3  
AY500828-1|AAS48499.1|  385|Homo sapiens NOP seven associated pr...    28   6.3  
AK025383-1|BAB15122.1|  250|Homo sapiens protein ( Homo sapiens ...    28   6.3  
BC131799-1|AAI31800.1|  447|Homo sapiens 5-hydroxytryptamine (se...    27   8.3  
BC031227-1|AAH31227.2|  452|Homo sapiens WDR88 protein protein.        27   8.3  
AK131444-1|BAD18589.1|  472|Homo sapiens protein ( Homo sapiens ...    27   8.3  
AF459285-1|AAL66182.1|  447|Homo sapiens 5-hydroxytryptamine rec...    27   8.3  

>BC050674-1|AAH50674.1|  341|Homo sapiens THO complex 6 homolog
           (Drosophila) protein.
          Length = 341

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 87  LYNTVLSQTFSPCGKYLVAGNIYGQLAVFDLDRIL 191
           L+ T+ SQ+ SPCGK+L AGN YGQ+A+F L   L
Sbjct: 23  LHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSSAL 57


>AK075330-1|BAC11552.1|  296|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0006 fis, clone NT2RM1000630, weakly similar to
           PUTATIVE SERINE/THREONINE-PROTEIN KINASE PKWA (EC
           2.7.1.-). ).
          Length = 296

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 87  LYNTVLSQTFSPCGKYLVAGNIYGQLAVFDLDRIL 191
           L+ T+ SQ+ SPCGK+L AGN YGQ+A+F L   L
Sbjct: 23  LHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSSAL 57


>BC003118-1|AAH03118.1|  317|Homo sapiens THOC6 protein protein.
          Length = 317

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = +3

Query: 96  TVLSQTFSPCGKYLVAGNIYGQLAVFDLDRIL 191
           T+ SQ+ SPCGK+L AGN YGQ+A+F L   L
Sbjct: 2   TIFSQSVSPCGKFLAAGNNYGQIAIFSLSSAL 33


>BC063041-1|AAH63041.1| 1129|Homo sapiens WD repeat and HMG-box DNA
           binding protein 1 protein.
          Length = 1129

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 14/38 (36%), Positives = 26/38 (68%)
 Frame = +3

Query: 69  NMLDKMLYNTVLSQTFSPCGKYLVAGNIYGQLAVFDLD 182
           ++ D  +  T+   T+SPCG+YL AG+I G + V++++
Sbjct: 223 DLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVE 260


>BC043349-1|AAH43349.1|  612|Homo sapiens WDHD1 protein protein.
          Length = 612

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 14/38 (36%), Positives = 26/38 (68%)
 Frame = +3

Query: 69  NMLDKMLYNTVLSQTFSPCGKYLVAGNIYGQLAVFDLD 182
           ++ D  +  T+   T+SPCG+YL AG+I G + V++++
Sbjct: 223 DLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVE 260


>BC005040-1|AAH05040.1|  613|Homo sapiens Unknown (protein for
           IMAGE:3615423) protein.
          Length = 613

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 14/38 (36%), Positives = 26/38 (68%)
 Frame = +3

Query: 69  NMLDKMLYNTVLSQTFSPCGKYLVAGNIYGQLAVFDLD 182
           ++ D  +  T+   T+SPCG+YL AG+I G + V++++
Sbjct: 223 DLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVE 260


>BC000622-1|AAH00622.1|  613|Homo sapiens WDHD1 protein protein.
          Length = 613

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 14/38 (36%), Positives = 26/38 (68%)
 Frame = +3

Query: 69  NMLDKMLYNTVLSQTFSPCGKYLVAGNIYGQLAVFDLD 182
           ++ D  +  T+   T+SPCG+YL AG+I G + V++++
Sbjct: 223 DLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVE 260


>AJ006266-1|CAA06932.1| 1129|Homo sapiens AND-1 protein protein.
          Length = 1129

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 14/38 (36%), Positives = 26/38 (68%)
 Frame = +3

Query: 69  NMLDKMLYNTVLSQTFSPCGKYLVAGNIYGQLAVFDLD 182
           ++ D  +  T+   T+SPCG+YL AG+I G + V++++
Sbjct: 223 DLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVE 260


>CR457333-1|CAG33614.1|  305|Homo sapiens REC14 protein.
          Length = 305

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 99  VLSQTFSPCGKYLVAGNIYGQLAVFDL--DRILH 194
           +LS  +SP GKYL +G I G + +FD+   ++LH
Sbjct: 151 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH 184


>BC010080-1|AAH10080.1|  305|Homo sapiens WD repeat domain 61
           protein.
          Length = 305

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 99  VLSQTFSPCGKYLVAGNIYGQLAVFDL--DRILH 194
           +LS  +SP GKYL +G I G + +FD+   ++LH
Sbjct: 151 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH 184


>AK024754-1|BAB14986.1|  305|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21101 fis, clone CAS04682. ).
          Length = 305

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 99  VLSQTFSPCGKYLVAGNIYGQLAVFDL--DRILH 194
           +LS  +SP GKYL +G I G + +FD+   ++LH
Sbjct: 151 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH 184


>AF309553-1|AAG31639.1|  305|Homo sapiens meiotic recombination
           protein REC14 protein.
          Length = 305

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 99  VLSQTFSPCGKYLVAGNIYGQLAVFDL--DRILH 194
           +LS  +SP GKYL +G I G + +FD+   ++LH
Sbjct: 151 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH 184


>AF100786-1|AAP97225.1|  305|Homo sapiens G protein beta
           subunit-like protein protein.
          Length = 305

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 99  VLSQTFSPCGKYLVAGNIYGQLAVFDL--DRILH 194
           +LS  +SP GKYL +G I G + +FD+   ++LH
Sbjct: 151 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH 184


>AF127799-1|AAP97249.1|  305|Homo sapiens G protein beta
           subunit-like protein protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 99  VLSQTFSPCGKYLVAGNIYGQLAVFDL--DRILH 194
           +LS  +SP GKYL +G I G + +F +   ++LH
Sbjct: 151 ILSIAYSPDGKYLASGAIDGIINIFAIATGKLLH 184


>AK001301-1|BAA91610.1|  385|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10439 fis, clone NT2RP1000688. ).
          Length = 385

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 96  TVLSQTFSPCGKYLVAGNIYGQLAVFDL 179
           ++ + T +P G  ++ GN +GQLA  DL
Sbjct: 229 SLTAMTLTPGGNSVIVGNTHGQLAEIDL 256


>AB037797-1|BAA92614.1|  437|Homo sapiens KIAA1376 protein
          protein.
          Length = 437

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 24 LKYFILHYIWISTIINML 77
          L +F+LHYI+I  +INM+
Sbjct: 8  LDFFVLHYIFIDFVINMV 25


>BC006351-1|AAH06351.1|  366|Homo sapiens WDR74 protein protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 105 SQTFSPCGKYLVAGNIYGQLAVFDL 179
           + T +P G  ++ GN +GQLA  DL
Sbjct: 232 AMTLTPGGNSVIVGNTHGQLAEIDL 256


>AY500828-1|AAS48499.1|  385|Homo sapiens NOP seven associated
           protein 1 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 105 SQTFSPCGKYLVAGNIYGQLAVFDL 179
           + T +P G  ++ GN +GQLA  DL
Sbjct: 232 AMTLTPGGNSVIVGNTHGQLAEIDL 256


>AK025383-1|BAB15122.1|  250|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21730 fis, clone COLF1557. ).
          Length = 250

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 105 SQTFSPCGKYLVAGNIYGQLAVFDL 179
           + T +P G  ++ GN +GQLA  DL
Sbjct: 97  AMTLTPGGNSVIVGNTHGQLAEIDL 121


>BC131799-1|AAI31800.1|  447|Homo sapiens 5-hydroxytryptamine
           (serotonin) receptor 3, family member C protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 109 KLFLLVENIWLPAIFTV 159
           KL +L EN+WLP IF V
Sbjct: 112 KLTVLAENLWLPDIFIV 128


>BC031227-1|AAH31227.2|  452|Homo sapiens WDR88 protein protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +3

Query: 72  MLDKMLYNT-VLSQTFSPCGKYLVAG-NIYGQLAVFDLDRI 188
           +L K+ Y+T ++S  FSP GKY+V+G ++   + + D + I
Sbjct: 205 LLWKVRYDTFIVSCKFSPDGKYVVSGFDVDHGICIMDAENI 245


>AK131444-1|BAD18589.1|  472|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16579 fis, clone TESTI2049956, weakly  similar
           to Vegetatible incompatibility protein HET-E-1. ).
          Length = 472

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +3

Query: 72  MLDKMLYNT-VLSQTFSPCGKYLVAG-NIYGQLAVFDLDRI 188
           +L K+ Y+T ++S  FSP GKY+V+G ++   + + D + I
Sbjct: 179 LLWKVRYDTFIVSCKFSPDGKYVVSGFDVDHGICIMDAENI 219


>AF459285-1|AAL66182.1|  447|Homo sapiens 5-hydroxytryptamine
           receptor 3 subunit C protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 109 KLFLLVENIWLPAIFTV 159
           KL +L EN+WLP IF V
Sbjct: 112 KLTVLAENLWLPDIFIV 128


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,633,897
Number of Sequences: 237096
Number of extensions: 852511
Number of successful extensions: 1420
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 76,859,062
effective HSP length: 73
effective length of database: 59,551,054
effective search space used: 1369674242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)