Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N04
         (291 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   1.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   3.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.1  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    20   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    20   7.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   7.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   7.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   9.4  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 112 LFLLVENIWLPAIFTVN 162
           L++  ENIWLP I   N
Sbjct: 108 LYVPSENIWLPDIVLYN 124


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 247 MWMCFGLLKSFVIRY 203
           +W+ FG L +F+ RY
Sbjct: 62  IWIGFGFLMTFLRRY 76


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 122  LWKIFGCRQ 148
            +W  FGCRQ
Sbjct: 1002 VWLFFGCRQ 1010


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 114 KFEREPYYITFCQA 73
           KFE   YY+T   A
Sbjct: 6   KFETSKYYVTIIDA 19


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 57  STIINMLDKMLYNTVLSQTFSPCGKYLVAG 146
           +T+IN     L +T+LS++     K+L  G
Sbjct: 8   TTLINAAFLCLASTILSESAGTSCKWLSEG 37


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 114 KFEREPYYITFCQA 73
           KFE   YY+T   A
Sbjct: 22  KFETSKYYVTIIDA 35


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 114 KFEREPYYITFCQA 73
           KFE   YY+T   A
Sbjct: 79  KFETSKYYVTIIDA 92


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 11/59 (18%), Positives = 26/59 (44%)
 Frame = -1

Query: 243 GCVLVC*NHLLYVIRLGVGYDLDQKQQVDRKYCRQPNIFHKEKKFEREPYYITFCQAYL 67
           GC ++C ++  ++  L   + LD +     +  R   +   E + ++E   +T    +L
Sbjct: 287 GCEVICEDYQAFLKHLNTEHTLDDRSTAQAR-VRMQVVSQLEIQLQKERDRLTAMMHHL 344


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 114 KFEREPYYITFCQA 73
           KFE   YY+T   A
Sbjct: 79  KFETAKYYVTIIDA 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,430
Number of Sequences: 438
Number of extensions: 1929
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)