Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N03
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 45 2e-05
10_08_0167 - 15370890-15371093,15371588-15371686,15371912-153719... 31 0.29
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 29 1.6
09_04_0701 + 19583386-19583554,19584290-19584441,19585123-195851... 28 2.1
03_02_0616 - 9874882-9874974,9875067-9875189,9875284-9875379,987... 28 2.1
04_03_0193 + 12477565-12478229,12478298-12478423,12478508-12478688 27 3.6
12_01_0518 - 4093206-4094955,4095357-4095810,4095966-4096236,409... 27 4.8
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 27 6.3
05_05_0227 - 23449579-23450459,23450574-23450691 27 6.3
>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 44.8 bits (101), Expect = 2e-05
Identities = 30/80 (37%), Positives = 38/80 (47%)
Frame = +3
Query: 12 NDVYVNTFCHPNPPTRVCVQCPLSSNIGLILDAVAHKSCVDHKSENNEKERVTMHVQGIS 191
N+VYV+ P V P S + L L V E+ + +HVQ IS
Sbjct: 808 NEVYVSFITEQKCPLGV----PSRSTVELPLVQVGLGHAYVEVLVTKEQVKRVLHVQSIS 863
Query: 192 HWAPANIGPYSQAIKVGEII 251
WAP+ IGPYSQA GEI+
Sbjct: 864 CWAPSCIGPYSQATLHGEIL 883
>10_08_0167 -
15370890-15371093,15371588-15371686,15371912-15371996,
15372570-15372619,15372688-15372764,15373282-15373357,
15374103-15374354,15374864-15374931,15375172-15375463,
15376553-15376896,15377517-15377793,15378440-15378506,
15378848-15378900
Length = 647
Score = 31.1 bits (67), Expect = 0.29
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 126 CVDHKSENNEKERVTMHVQGISHWAPANIGP 218
C+++K+ N+EK + + + W PA+IGP
Sbjct: 323 CLNNKNNNHEKLEILDSAELLPGWTPADIGP 353
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 198 APANIGPYSQAIKVGEII 251
APA +GPYSQAIK ++
Sbjct: 65 APAALGPYSQAIKANNMV 82
>09_04_0701 +
19583386-19583554,19584290-19584441,19585123-19585181,
19585319-19585344,19585407-19585758,19586184-19586667
Length = 413
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 317 PHFHQRFIVHRGTSAXF*HARAYNFPHLNSLTIRSD 210
PH H + HR T+ RA N HL SLT S+
Sbjct: 243 PHMHDNSLFHRPTAR-----RASNLAHLRSLTAASE 273
>03_02_0616 -
9874882-9874974,9875067-9875189,9875284-9875379,
9875457-9875666,9875718-9875812,9876032-9876123,
9876539-9876660
Length = 276
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +3
Query: 18 VYVNTFC-HPNPPTR---VCVQCPLSSNIGLILDAVAHKSCVDHKSENNEKERVTMH 176
V+ ++C +PN T +C QCPL S L +D V + SEN +++ + H
Sbjct: 58 VHEESWCAYPNSRTGFLIICYQCPLFSKCSLTIDTVIRPD--NGCSENTKRQILREH 112
>04_03_0193 + 12477565-12478229,12478298-12478423,12478508-12478688
Length = 323
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +3
Query: 42 PNPPTRVCVQCPLSSNIGLILDAVAHK-SCVDHKSENN 152
P PP C + PLSS + HK C DH N
Sbjct: 166 PPPPATSCGKPPLSSAAAAMSAGAGHKRKCHDHAHSEN 203
>12_01_0518 -
4093206-4094955,4095357-4095810,4095966-4096236,
4096308-4096628
Length = 931
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 21 YVNTFCHPNPPTRVCVQCPLSSNIGLILDAVAHKSCVD 134
Y+N HP C+ LSSN G V ++ VD
Sbjct: 593 YINNLDHPKVTHAKCLMLDLSSNSGADQTVVTFETLVD 630
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 178 CKAYRTGHRLISDLIVKLLRW 240
C A + G L SDLI L+RW
Sbjct: 737 CSAVKEGSELPSDLIQTLIRW 757
>05_05_0227 - 23449579-23450459,23450574-23450691
Length = 332
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 346 ECERALPPRDHTSTNAS 296
+ ERALPP+D ST+AS
Sbjct: 210 QLERALPPQDTASTSAS 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,208,606
Number of Sequences: 37544
Number of extensions: 199103
Number of successful extensions: 426
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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