Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N02
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   109   2e-25
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    28   0.53 
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     27   0.93 
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   0.93 
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    27   1.6  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    25   5.0  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    25   5.0  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   6.6  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   6.6  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   6.6  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    24   8.7  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  109 bits (262), Expect = 2e-25
 Identities = 50/83 (60%), Positives = 63/83 (75%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTSDKT 359
           LF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +T DK 
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85

Query: 360 TDKGLFKILEKYRP*TDAVRKER 428
           T   +FK+L KYRP T A +K+R
Sbjct: 86  TATQVFKLLNKYRPETAAEKKQR 108


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 301 SVVSKCRRQSTSSPRHQIKPQTKVCSRSWRNTG 399
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 307 VSKCRRQSTSSPRHQIKPQTKVCSRSWRNTGHKLMQ 414
           +S C  +  SS  H++ P     ++  RNT  KLMQ
Sbjct: 565 LSSCMEEFVSSFSHELTPFASQLAKQLRNTFVKLMQ 600


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 331 TSSPRHQIKPQTKVCSRSWRNTGHKLMQSGKSV 429
           + + RH + P+ ++C  S RN G   ++S K V
Sbjct: 106 SKAQRHVLDPRCQICVHSQRNDGDDNLESDKFV 138


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
 Frame = +1

Query: 211 LARTSSQPE--IYPVSCDGRNIFASSVKRLCYSVVSKCRRQSTSSPR------HQIKPQT 366
           LAR  ++PE  +Y V+    N        + Y+ +SK R   +S  R      H+ K +T
Sbjct: 83  LARVRAKPETVLYKVADPNENNKYPICSIISYTELSKLRENQSSRLREAEKSKHKNKTRT 142

Query: 367 KVCSRSWRNTGHKLMQSGKSV 429
           +    SWR   + + +  KSV
Sbjct: 143 RYVLFSWRTDVNDIERKLKSV 163


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 1   GTGDSFGVRNRSRIYSWPLD 60
           G+  SF + N+ R+Y+W L+
Sbjct: 287 GSYHSFAIDNKGRVYAWGLN 306


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +1

Query: 307 VSKCRRQSTSSPRHQIKPQTKVCSRSWRNTGHKLMQSG 420
           + +C+  +    + Q+    KVC   ++  G+KL   G
Sbjct: 301 LKQCQEPAYKEYQAQVVKNAKVCEEEFKKRGYKLAADG 338


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 164 EDCKPSIREENKELCY 211
           E CK  + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 65  ELKSIQDGXXXXXXXDREKSSGRSTCGEES*A-QEDCKPSIREENKELC 208
           ELKS+ +G       D   S   S C +E  +     KPS   + K+ C
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 298 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF 200
           N  F R +R+YF    + DRSL  +  W   ++
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRY 203


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 418 LTASVYGLYFSKILNRPLSVVLSDVWVNWLIGGGTLRRR 302
           L + ++ ++   ++NR  +VV    W+   IG G   +R
Sbjct: 89  LPSKLFTIFSRSLVNRSAAVVHVICWILQFIGHGVFEKR 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,222
Number of Sequences: 5004
Number of extensions: 31566
Number of successful extensions: 104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)