Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N02
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 107 4e-24
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 107 4e-24
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 88 3e-18
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 1.6
02_01_0433 + 3153802-3154064,3154149-3154713 29 2.1
10_07_0133 + 13274190-13274317,13274533-13276371,13277064-132772... 28 2.8
01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,432... 28 3.7
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 4.9
02_02_0450 - 10381360-10381391,10381737-10382283,10382770-103829... 27 6.4
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 27 6.4
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 27 8.5
02_04_0444 - 22974979-22975251,22975338-22975379,22975471-229754... 27 8.5
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 107 bits (257), Expect = 4e-24
Identities = 49/83 (59%), Positives = 61/83 (73%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTSDKT 359
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+T DK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 360 TDKGLFKILEKYRP*TDAVRKER 428
LFK+L KYRP A +KER
Sbjct: 84 LATNLFKMLLKYRPEDKAAKKER 106
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 107 bits (257), Expect = 4e-24
Identities = 49/83 (59%), Positives = 61/83 (73%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTSDKT 359
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+T DK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 360 TDKGLFKILEKYRP*TDAVRKER 428
LFK+L KYRP A +KER
Sbjct: 68 LATNLFKMLLKYRPEDKAAKKER 90
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 87.8 bits (208), Expect = 3e-18
Identities = 39/59 (66%), Positives = 47/59 (79%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTSDK 356
LFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+T DK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDK 83
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 201 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP 326
N +GQD + ++ +V+ Y I Q+ + +L RLK PP
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPP 394
>02_01_0433 + 3153802-3154064,3154149-3154713
Length = 275
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 279 QRQKAVLQRRLKVPPPINQFTQTSDKTTDKGLFKILEKY 395
Q + + +R P PIN +K DK L +ILEK+
Sbjct: 39 QSEMSKEDQRTSKPVPINSTMNKEEKWLDKSLDRILEKF 77
>10_07_0133 +
13274190-13274317,13274533-13276371,13277064-13277253,
13277442-13277657
Length = 790
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 303 RRLKVPPPINQFTQTSDKTTDKGLFKILEKY 395
+R P PIN +K DK L +ILEK+
Sbjct: 90 QRTSKPVPINSTMNKEEKWLDKALDRILEKF 120
>01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,
4329925-4331469,4332220-4332429,4332563-4332713,
4332791-4333031,4333898-4333956,4334379-4334653,
4334813-4334955,4335034-4335088,4335181-4335258,
4335351-4335478,4335533-4335575
Length = 1173
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 277 SSVKRLCYSVVSKCRRQSTSSPRHQIKPQTKVCSRSWR 390
S + LC+SVVS ++ +SP Q+ ++ + WR
Sbjct: 938 SEKQELCFSVVSLLWQKLIASPEMQMSAESTSAHQGWR 975
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 224 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 331
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>02_02_0450 -
10381360-10381391,10381737-10382283,10382770-10382952,
10383123-10383863
Length = 500
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 303 RRLKVPPPINQFTQTSDKTTDKGLFKILEKY 395
+R P PIN +K DK L +ILEK+
Sbjct: 47 QRTSKPVPINSTMNKEEKWLDKVLDRILEKF 77
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 164 EDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSA 319
ED + + E+ +L +W A S PF A P + V +SS A
Sbjct: 398 EDGRSKLTSESNQLTFWSDSQAGNGSSPFHHSAGGGMSPYYRDVVLSSSSKA 449
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 290 LLTLDANIFRPSHETG*ISGWL 225
LLT + N RPSH + GW+
Sbjct: 102 LLTKNPNFVRPSHRLNEVQGWV 123
>02_04_0444 -
22974979-22975251,22975338-22975379,22975471-22975479,
22975783-22975968,22976063-22976299,22982410-22982625,
22982729-22983059,22983410-22983522,22984538-22984647,
22985325-22985439
Length = 543
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 304 VVSKCRRQSTSSPRHQIKPQTKVCSRSWRNTGHKLM 411
VV R SS RH I T+ +R+ + TG+KL+
Sbjct: 437 VVEAMRDCDPSSARHWIVRNTRTVNRTGQPTGYKLV 472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,276,817
Number of Sequences: 37544
Number of extensions: 213642
Number of successful extensions: 638
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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