Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N01
         (245 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   5.6  
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    22   9.8  

>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 165 SSFRSWRWGLG 133
           SS  SW WGLG
Sbjct: 141 SSILSWSWGLG 151


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 186 AFGDQLLRKRHHLVPSAKPG 245
           AFG   +RK  +L+P A  G
Sbjct: 46  AFGGNKIRKLEYLIPEAIDG 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 549,737
Number of Sequences: 5004
Number of extensions: 4846
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)