Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M24
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   1.8  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   3.1  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   3.1  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   4.1  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   7.2  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    24   7.2  

>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 28  PQEVEEVASKLQIGDWFVLYQLGKNIDPLIYNELMTD 138
           P  + +V  +LQ G    LYQ  +NI  LIY E M D
Sbjct: 603 PSTIGQVRRQLQQGRR--LYQWARNIHYLIYEENMRD 637


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 387 ARQRSFAASHNGMSVCSCRSRHSLCAGSPP 298
           + +R    SH+ + +C CRSR     G PP
Sbjct: 310 SHRRKLLTSHSTLKICFCRSR-----GDPP 334


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +2

Query: 23  LLHRKLKKLPVSCRSVI 73
           +L ++LK+LPV+C S+I
Sbjct: 291 ILEKELKELPVACYSII 307


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 91  VGRGRTNHRSAAYWQLLQLPVEEPDG 14
           V  G+TNH      + LQ  +EEP G
Sbjct: 148 VDSGKTNHEEIHESRHLQTEIEEPSG 173


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 87   VEDEPITDLQLTGNFFNFLWRSQTASASS 1
            VE EP+  +  +G+   F+W     SASS
Sbjct: 1593 VEREPLFLIAASGSPHAFIWNPHNVSASS 1621


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -1

Query: 212 PVLNINTDTHTHYTAPFFS--SNFLAKSVINSL*ISGSMFFPS 90
           PVL I  + H  +T+P FS  S+ + K+ + S  +  ++ FP+
Sbjct: 739 PVLLIEFEQHQSFTSPPFSDLSSEIGKNDVQSKLVLLTLSFPN 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,207
Number of Sequences: 5004
Number of extensions: 26871
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)