Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M24
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0301 + 22119619-22120221 30 0.75
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 30 0.75
02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243 28 3.0
04_03_0723 - 19016108-19016383 27 4.0
10_08_0364 + 17217631-17217833,17218134-17218308,17218391-172184... 27 5.3
07_03_1077 - 23787606-23788184 27 5.3
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019... 27 5.3
05_05_0107 + 22442118-22443437,22443775-22443873 27 5.3
05_03_0483 + 14585581-14587977 27 5.3
12_02_1031 + 25537495-25537552,25538774-25538836,25538966-255392... 27 7.0
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 27 7.0
06_01_0597 - 4312592-4313893 27 7.0
09_01_0044 + 796237-796327,797025-797079,798129-798639 26 9.2
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987... 26 9.2
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 26 9.2
01_01_0260 - 2110026-2110447,2110510-2110651 26 9.2
>11_06_0301 + 22119619-22120221
Length = 200
Score = 29.9 bits (64), Expect = 0.75
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 350 CRYAAAAPGTLCARAPRPGCGSRATCGRAVARAI 249
C A PG AR P P CG R G RA+
Sbjct: 127 CELAVGGPGAF-ARYPNPDCGERLDTGAGGERAV 159
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 29.9 bits (64), Expect = 0.75
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 37 VEEVASKLQIGDWFVLYQLGKNIDPLIYNELMTDLAKK 150
VEE++ K +GDW+ L G P Y+EL +LAKK
Sbjct: 883 VEELSVK--VGDWYYLDGTGHERGPFSYSELQ-ELAKK 917
>02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243
Length = 523
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 368 PRRIMECRYAAAAPGTLCARAPRPGCGSRATCGRAVARA 252
PR Y A+ GT ++ P PGC + CG A A
Sbjct: 12 PRCTTFVPYGASGSGT--SKTPHPGCAAGGGCGCATVEA 48
>04_03_0723 - 19016108-19016383
Length = 91
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 328 PALFVRGLPARAAVQELPAGAPWPGPS 248
PA V PA AA A APWP P+
Sbjct: 9 PAAVVVVAPAAAAPVPYSAAAPWPAPA 35
>10_08_0364 +
17217631-17217833,17218134-17218308,17218391-17218474,
17218561-17218802,17218883-17219108,17219246-17219325,
17219408-17219492,17219665-17219796,17219927-17220040,
17220123-17220170,17220413-17220497,17220722-17220834
Length = 528
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 70 DWFVLYQLGKNIDPLIYNELMTDLAKKFEEKKGAV*C 180
+W LY++ P + +EL T +KFEE + C
Sbjct: 418 EWDKLYEIEAAYQPQVTDELDTQNFEKFEESSDNIQC 454
>07_03_1077 - 23787606-23788184
Length = 192
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GRGRSRLAPPQEVEEVASKLQIGD 72
GRGR R P +E+ +A L +GD
Sbjct: 88 GRGRRRATPAEELAALALSLALGD 111
>06_02_0173 -
12601025-12601071,12601632-12601698,12601857-12601934,
12602235-12602396,12603309-12603440,12604604-12604656,
12605808-12606372
Length = 367
Score = 27.1 bits (57), Expect = 5.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 286 QELPAGAPWPGPS 248
Q +P+GAP+PGPS
Sbjct: 320 QAMPSGAPYPGPS 332
>05_05_0107 + 22442118-22443437,22443775-22443873
Length = 472
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 377 GRSPRRIMECRYAAAAPGTLCARAPRPGCGSRATCGRAVARAIVY 243
GR+P + AA P R+P P GS AT A+ A+ Y
Sbjct: 135 GRAPADLGAVNVTAAGPSLAVVRSPAPFPGSNATVLGAIT-AVPY 178
>05_03_0483 + 14585581-14587977
Length = 798
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +1
Query: 25 PPQEVEEVASKLQIGDWFV----LYQLGKNIDPLIYNELMTDLAKKFEE 159
PP E ++ + +W + + LG+ IDP + E+ D KKF +
Sbjct: 665 PPVNTELPEEQVSLREWALSCKKIGTLGEIIDPYLQGEIAPDCLKKFAD 713
>12_02_1031 +
25537495-25537552,25538774-25538836,25538966-25539279,
25539361-25539612,25539698-25540411
Length = 466
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 296 GCGSRATCGRAVARA 252
GCG R+TCG A A A
Sbjct: 257 GCGRRSTCGAAAAAA 271
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 326 GTLCARAPRPGCGSRATCGRA 264
G CA PRP CG RA G A
Sbjct: 114 GAGCAIRPRPRCGPRARSGVA 134
>06_01_0597 - 4312592-4313893
Length = 433
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 377 GRSPRRIMECRYAAAAPGTLCARAPRPGCGSRATCGRAVARAIVY 243
GRS +E +A+ A G A AP P C ARA++Y
Sbjct: 164 GRSAAHFVET-WASIARGAPAADAPVPPCFDHRLLAARPARAVLY 207
>09_01_0044 + 796237-796327,797025-797079,798129-798639
Length = 218
Score = 26.2 bits (55), Expect = 9.2
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -3
Query: 369 AASHNGMSVCSCRSRHSLCAGSPPGLRFKSYLRARRGPGHRLLIRVTRSTLTSSPQ 202
+A ++ S R SLC PP S+ R G G RVT +T +++PQ
Sbjct: 95 SADAAAVAAASSLCRQSLCCVPPPPA--SSHPTTRSGRGKEGEGRVTATTSSAAPQ 148
>07_03_1583 -
27898375-27898436,27898455-27898539,27898621-27898768,
27899009-27899028,27899135-27899236,27899743-27899812,
27899956-27900012,27902324-27902484,27902742-27902761,
27902997-27903069,27903077-27903169,27903456-27903496,
27903597-27903858
Length = 397
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 191 RC*Y*GLDVRVERVTRISKRWPGPRRARR 277
RC G D++ + + K W PR ARR
Sbjct: 176 RCHQGGHDIQDAAIAHLKKMWFSPREARR 204
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -2
Query: 307 LPARAAVQELPAGAPWPGPSFTNTCHTLDP 218
LP AA P P P PS + H L P
Sbjct: 101 LPTAAAAAPAPPPPPAPAPSLHHHLHALQP 130
>01_01_0260 - 2110026-2110447,2110510-2110651
Length = 187
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 365 RRIMECRYAAAAPGTLCARAPRPGCG 288
R I C A G + RAPRPG G
Sbjct: 126 RAISGCSQATGVGGQVQRRAPRPGSG 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,441,714
Number of Sequences: 37544
Number of extensions: 228511
Number of successful extensions: 830
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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