Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M24
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006625-3|AAK68280.1|  232|Caenorhabditis elegans Mediator prot...    30   0.50 
AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical ...    28   2.7  
AC024807-3|AAK84614.1|  252|Caenorhabditis elegans Hypothetical ...    27   3.6  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z81045-1|CAB02816.1|  356|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AC006625-3|AAK68280.1|  232|Caenorhabditis elegans Mediator protein
           18 protein.
          Length = 232

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 85  RGRTNHRSAAYWQLLQLPVEEPD 17
           R RT HR   YWQL  + V EPD
Sbjct: 83  RFRTEHRIQNYWQLKYIGVPEPD 105


>AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical
           protein F20H11.4 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +1

Query: 10  RSRLAPPQEVEEVASKLQIGDWFVLYQL 93
           +S++ PP + +E+A+K +  +WF + +L
Sbjct: 89  KSKMKPPPDTQELANKKKFCNWFFVDEL 116


>AC024807-3|AAK84614.1|  252|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.3 protein.
          Length = 252

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 372 FAASHNGMSVCSCRSRHSLCAGSPPGLRFKSYL 274
           FAAS        C S  ++C  SPP L   SYL
Sbjct: 66  FAASKECGVRGECESARAVCVSSPPPLSHHSYL 98


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 384 RQRSFAASHNGMSVCSCRSRHSLCAGSPPG 295
           RQ + AA   G   C C ++ S C   PPG
Sbjct: 78  RQYATAAVSGGGGGCQCAAQASGCPAGPPG 107


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 384 RQRSFAASHNGMSVCSCRSRHSLCAGSPPG 295
           RQ + AA   G   C C ++ S C   PPG
Sbjct: 78  RQYATAAVSGGGGGCQCAAQASGCPAGPPG 107


>Z81045-1|CAB02816.1|  356|Caenorhabditis elegans Hypothetical
           protein C36F7.1 protein.
          Length = 356

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 322 LFVRGLPARAAVQELPAGAPWPGPSFTNTCHTL 224
           +F  G+PA    + L  G P P P F +  H L
Sbjct: 76  MFPHGIPADLKPEMLLGGGPGPMPMFFSDAHRL 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,028,130
Number of Sequences: 27780
Number of extensions: 171078
Number of successful extensions: 493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)