Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M23
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   148   4e-37
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   143   1e-35
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    29   0.28 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.0  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   7.9  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    24   7.9  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    24   7.9  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  148 bits (358), Expect = 4e-37
 Identities = 68/113 (60%), Positives = 88/113 (77%)
 Frame = +3

Query: 69  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 248
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 249 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 407
           E SFRK +L  ED+QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTT
Sbjct: 78  EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTT 130


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  143 bits (346), Expect = 1e-35
 Identities = 65/113 (57%), Positives = 88/113 (77%)
 Frame = +3

Query: 69  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 248
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 249 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 407
           E +FRK +L  ED+QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTT
Sbjct: 78  EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTT 130


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 204 VFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 377
           VF+V   + + D    R+  +   +A   Q R V C  H MDL  + LR +V  ++   L
Sbjct: 86  VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143

Query: 378 IEANIDVKTT 407
           +E + D++TT
Sbjct: 144 LETSKDLETT 153


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 149 PCQSHPGNKNCI*GSKGACF 208
           PC  H   K C  G  GACF
Sbjct: 347 PCGEHTCKKRCHSGLCGACF 366


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 177 IASEGLKGRVFEVSLADLQADSDAERSFRKFR 272
           + S    GR  +  +AD   DSD+ERS+R+ R
Sbjct: 351 VGSSSSHGRQQDSYIAD---DSDSERSYRRVR 379


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 190  PSDAIFVPWVRLTRVVPTCLLVNMDGALTSYQ 95
            PSD+ F  W +L R+V +  +  +   LT YQ
Sbjct: 1905 PSDSTFPLWAKLPRLVISEDVQGISQPLTVYQ 1936


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 39  SKGLYFYRPP 10
           S+GLYFY PP
Sbjct: 137 SRGLYFYHPP 146


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 116 RRFNIVPVFTGERINNLLLNTLLASFRKAFIFTD 15
           R  N+V VF G+ + N  LN  +  +    +FT+
Sbjct: 172 RTENVVKVFQGKNVKNDSLNLRVRVWITGIVFTE 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,500
Number of Sequences: 5004
Number of extensions: 32169
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)