Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M23
         (408 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   194   4e-50
AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   194   4e-50
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   194   4e-50
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   184   3e-47
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   123   8e-29
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...    47   1e-05
X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II transm...    28   5.4  
AE014298-1757|AAF48154.2| 3004|Drosophila melanogaster CG32659-P...    28   5.4  
M14646-1|AAA28988.1|  462|Drosophila melanogaster protein ( D.me...    27   7.2  
BT011034-1|AAR30194.1|  240|Drosophila melanogaster RE44641p pro...    27   7.2  
AE014296-1707|AAF50226.2|  462|Drosophila melanogaster CG8308-PA...    27   7.2  

>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  194 bits (473), Expect = 4e-50
 Identities = 91/112 (81%), Positives = 99/112 (88%)
 Frame = +3

Query: 69  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 248
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 249 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKT 404
           ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKT 132


>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  194 bits (473), Expect = 4e-50
 Identities = 91/112 (81%), Positives = 99/112 (88%)
 Frame = +3

Query: 69  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 248
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 249 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKT 404
           ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKT 132


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  194 bits (473), Expect = 4e-50
 Identities = 91/112 (81%), Positives = 99/112 (88%)
 Frame = +3

Query: 69  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 248
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 249 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKT 404
           ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKT 132


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  184 bits (449), Expect = 3e-47
 Identities = 88/113 (77%), Positives = 96/113 (84%), Gaps = 1/113 (0%)
 Frame = +3

Query: 69  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA-DLQADSD 245
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+  KGRVFEVSL  DLQ D D
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDID 80

Query: 246 AERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKT 404
            E SFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT
Sbjct: 81  PEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKT 133


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  123 bits (297), Expect = 8e-29
 Identities = 59/69 (85%), Positives = 61/69 (88%)
 Frame = +3

Query: 198 GRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 377
           GRVFEVSLADLQ D D ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73

Query: 378 IEANIDVKT 404
           IEA ++ KT
Sbjct: 74  IEAIVEAKT 82


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/27 (77%), Positives = 23/27 (85%)
 Frame = +3

Query: 324 MDLTTDKLRWMVKKWQTLIEANIDVKT 404
           MDLTTDK R MVKKWQTLIEA ++ KT
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKT 27


>X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II
            transmembrane protein protein.
          Length = 3004

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 199  PFRP-SDAIFVPWVRLTRVVPTCLLVNMDGALTS 101
            PFRP +  +FVPW R+  + P  + ++ D   TS
Sbjct: 963  PFRPLTRTVFVPWNRIVVLPPVQMQLSDDDETTS 996


>AE014298-1757|AAF48154.2| 3004|Drosophila melanogaster CG32659-PA
            protein.
          Length = 3004

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 199  PFRP-SDAIFVPWVRLTRVVPTCLLVNMDGALTS 101
            PFRP +  +FVPW R+  + P  + ++ D   TS
Sbjct: 963  PFRPLTRTVFVPWNRIVVLPPVQMQLSDDDETTS 996


>M14646-1|AAA28988.1|  462|Drosophila melanogaster protein (
           D.melanogaster alpha-tubulin gene (alpha-4), complete
           cds. ).
          Length = 462

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 380 NQCLPFLYHPSELISGEVHA 321
           N C+  LYHP +LISG+  A
Sbjct: 91  NGCMRELYHPEQLISGKEDA 110


>BT011034-1|AAR30194.1|  240|Drosophila melanogaster RE44641p
           protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 380 NQCLPFLYHPSELISGEVHA 321
           N C+  LYHP +LISG+  A
Sbjct: 91  NGCMGELYHPEQLISGKEDA 110


>AE014296-1707|AAF50226.2|  462|Drosophila melanogaster CG8308-PA
           protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 380 NQCLPFLYHPSELISGEVHA 321
           N C+  LYHP +LISG+  A
Sbjct: 91  NGCMRELYHPEQLISGKEDA 110


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,737,811
Number of Sequences: 53049
Number of extensions: 411752
Number of successful extensions: 1054
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)