Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M23
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   4.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   4.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/46 (21%), Positives = 22/46 (47%)
 Frame = +3

Query: 255 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANI 392
           SFR  R+ A +  GRN    + G      K+   +++  +++  ++
Sbjct: 410 SFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAIRRGASILRVSM 455


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 237 DSDAERSFRKFRLIAEDVQGRNVLCN 314
           D  +++  R++RL AED+     + N
Sbjct: 167 DLTSDKLLRQYRLRAEDINMNTFIAN 192


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 119 HVHQETSGHHPCQSHP 166
           H HQ    HHP Q HP
Sbjct: 317 HPHQ----HHPSQYHP 328


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = +3

Query: 318 HGMDLTTDKLRWMVKKWQTLIEANID 395
           +GM +  DK+   + +W+  + +N++
Sbjct: 54  NGMQIWNDKVFITIPRWKNGVPSNLN 79


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 214 SPLLISRLIVMRKGLSASSDLSLRMSRDVMFSAISTA 324
           S  LI+ LIV+      ++D+SL  + D M   I T+
Sbjct: 443 SAALITMLIVLTALGLPTNDISLLFAVDWMLDRIRTS 479


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = -1

Query: 249 PHHYQPGDQQGRPQKHAPLDPQMQ 178
           PH      Q   PQ  A   PQ Q
Sbjct: 810 PHQQLHHHQSTHPQAQAQAQPQQQ 833


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,189
Number of Sequences: 438
Number of extensions: 2334
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)