Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M21
         (242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    24   3.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    24   3.2  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    23   7.5  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    22   9.9  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    22   9.9  

>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 185 SVFVQLFICPFL*YYLVSIFLQRILVNWRG 96
           SVF+      FL Y++     QR+++N RG
Sbjct: 208 SVFLLFCAIAFLAYFVGGFVYQRVVLNARG 237


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 183 CFCSTFYMSVFVILLSI 133
           C  S FY SVF ILL +
Sbjct: 185 CSYSVFYASVFYILLGV 201


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 229 HTPHLYTHLGIAFTR 185
           H+ +L TH+G AF+R
Sbjct: 914 HSANLLTHIGQAFSR 928


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 239 PPAPHTSPLHTP 204
           PP P T P H P
Sbjct: 630 PPTPRTKPSHKP 641


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 184 LFLFNFLYVRFCNTT*YRFF 125
           +F  +FLY  FC  T Y+ F
Sbjct: 87  VFHLSFLYNPFCRYTFYKHF 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 787,483
Number of Sequences: 5004
Number of extensions: 11387
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)