Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M21
         (242 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0902 + 20707834-20708187                                         28   1.2  
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598     28   1.2  
09_03_0142 - 12718888-12719724,12719767-12720369                       27   1.6  
01_03_0259 - 14312197-14312259,14312384-14312456,14312651-143127...    27   2.8  
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38...    25   6.4  
11_02_0151 + 8837444-8837876,8838173-8839434,8839517-8839885,883...    25   8.5  
01_06_0660 + 30969879-30970218,30970346-30970514,30971373-309716...    25   8.5  

>04_03_0902 + 20707834-20708187
          Length = 117

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 242 PPPAPHTSPLHTPRNRVYASV 180
           PPP PHTSP   P    Y+ +
Sbjct: 69  PPPLPHTSPTPEPTPPTYSPI 89


>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
          Length = 537

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 238 PPLHTPHLYTHLG 200
           PP H PHLY H+G
Sbjct: 523 PPRHPPHLYLHVG 535


>09_03_0142 - 12718888-12719724,12719767-12720369
          Length = 479

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 241 LPPLHTPHLYTHLGIAFTRLF 179
           +PP+H  HL  H G+A   LF
Sbjct: 37  VPPIHLAHLLRHRGLAAVTLF 57


>01_03_0259 -
           14312197-14312259,14312384-14312456,14312651-14312754,
           14313073-14313192,14313278-14313364,14313925-14314023,
           14314110-14314203,14314298-14314368,14315258-14316040
          Length = 497

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 242 PPPAPHTSPLHTPR 201
           PPP PH  P+H P+
Sbjct: 100 PPPPPHPRPIHGPQ 113


>06_01_0039 -
           386576-387098,387173-387468,387744-388067,388165-388276,
           388355-388482,388914-389048,389122-389250,389620-389787,
           389897-390019,390099-390227,390543-390866,390946-392901
          Length = 1448

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 242 PPPAPHTSPLHTPRN 198
           PPP PHT+P   P N
Sbjct: 50  PPPQPHTAPPPPPPN 64


>11_02_0151 +
           8837444-8837876,8838173-8839434,8839517-8839885,
           8839963-8840223,8840230-8840442,8840602-8840967,
           8841402-8841667,8842087-8842197,8842288-8842317,
           8842444-8842465
          Length = 1110

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 242 PPPAPHTSPLHTPRNRVYAS 183
           P P PH SPL  PR +  A+
Sbjct: 439 PLPGPHLSPLAPPRGKHVAA 458


>01_06_0660 +
           30969879-30970218,30970346-30970514,30971373-30971635,
           30971717-30971864,30972019-30972082,30972225-30972248
          Length = 335

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 242 PPPAPHTSPLHTPRNR 195
           PPP PH +P    RNR
Sbjct: 149 PPPPPHGAPATPARNR 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,148,387
Number of Sequences: 37544
Number of extensions: 69794
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)