Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M21
         (242 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28944-10|AAM81117.1|   71|Caenorhabditis elegans Hypothetical p...    26   3.1  
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical...    25   7.1  
AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 comple...    25   9.4  

>U28944-10|AAM81117.1|   71|Caenorhabditis elegans Hypothetical
           protein C18A3.10 protein.
          Length = 71

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 186 VCFCSTFYMSVFVILLSI 133
           +CFCST  +  F+ILL I
Sbjct: 41  ICFCSTLILVGFLILLGI 58


>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical
           protein C04A11.3 protein.
          Length = 1228

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 242 PPPAPHTSPLHTPRN 198
           P  +PH SP H+PRN
Sbjct: 497 PRRSPHESPRHSPRN 511


>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
            protein Y69A2AR.31 protein.
          Length = 1219

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 183  CFCSTFYMSVFVILLSIDFFT 121
            C  S +Y+ + +I L IDF T
Sbjct: 1197 CLLSMYYLHLLIITLLIDFIT 1217


>AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 complex
           component protein 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 218 PLHTPRNRVY-ASVFVQLFICPFL*YYLVSIFLQRILVNWRGPNSN 84
           PL+TP NR Y A +  + F  P L Y  V   L  +  +W    +N
Sbjct: 123 PLNTPENREYTAEIMFESFNVPGL-YIAVQAVL-ALTASWNSREAN 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,392,004
Number of Sequences: 27780
Number of extensions: 63833
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)