Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M20
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 29 0.15
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 0.61
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 27 0.80
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 1.1
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|... 25 1.8
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 1.8
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 25 2.4
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 25 3.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 24 4.3
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 24 5.6
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 24 5.6
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 23 7.5
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 23 7.5
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 23 9.9
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 23 9.9
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 23 9.9
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa... 23 9.9
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 9.9
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 29.1 bits (62), Expect = 0.15
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +2
Query: 86 TSKLSPAEIEDLNNENKAWNVLCILNVLHSLVDKSNIKKQLEVYAAGGDPDSVAGEFGRH 265
T++ SPA ED ++ N AW VL + V+ S K ++ Y PDS +
Sbjct: 153 TNEASPASEEDEDDFNVAWEVLDLTRVMQS--------KAVDAY-----PDSKDEKIRLA 199
Query: 266 SLYKMLGYFSL 298
+Y +LG SL
Sbjct: 200 DIYDLLGELSL 210
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 0.61
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 17 QWLWELIDEFVYQFQS-FAQYRSRTSKLSPAEIEDLNNEN 133
+W WEL+DE+ + +S Q+ + TS++ +DL +
Sbjct: 674 KWFWELMDEWSNEKKSRLLQFTTGTSRIPVNGFKDLQGSD 713
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 26.6 bits (56), Expect = 0.80
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 258 PNSPATESGSPPAAYTSSCFLMLDLS-TRECNTLRIQSTFHALFSLFKSSISAGL 97
PN ES PPA + +S F+ L ++ T EC I+S H +SL S+ GL
Sbjct: 135 PNPLEIESALPPAMFDAS-FIFLPINDTNECG---IESGSH--WSLLVVSVEKGL 183
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 1.1
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -3
Query: 299 PRKNIPASCRVNVYQTRPPRSQDPHQQHTPLVA 201
P K IP R N + PH +HT VA
Sbjct: 22 PPKRIPVPSRQNKIEENSTTKNFPHSRHTSTVA 54
>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.4 bits (53), Expect = 1.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 2 HEVPDQWLWELIDE 43
HE P+ WLW L+DE
Sbjct: 101 HEYPE-WLWSLLDE 113
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 1.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 140 WNVLCILNVLHSLVDKSNIKKQLEVYAAGGDPDSVAGEFGRHSLY 274
W+ +C+ L + D S K + V GG G FG HSL+
Sbjct: 215 WHYMCMF--LDTRYDPSTQKIRGHVALGGGTDMHKLGVFGSHSLH 257
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 2.4
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 56 FQSFAQYRSRTSKLSPAEIEDLNNENKAW--NVLCILNVLHSLVDKS 190
+ +FA+Y S + ++DL N+ +W N + NV+++L DKS
Sbjct: 290 YTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWNVIYTL-DKS 335
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 24.6 bits (51), Expect = 3.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 155 ILNVLHSLVDKSNIKKQLEVY 217
+L+ LH L+ SN K LE++
Sbjct: 294 LLSFLHKLIASSNAPKSLEIF 314
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.2 bits (50), Expect = 4.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 89 SKLSPAEIEDLNNENKAWNVLCILNVLH 172
SK P +I L ENK + + CI +VL+
Sbjct: 1426 SKKVPIQIFFLQGENKNYVLFCIHHVLY 1453
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 123 TMRTRHGMYFVFLMYYILLLTNPTSRSN*RCMLLVGILTPW 245
T+ T +YF YY+ + + RC+ + G + W
Sbjct: 451 TLSTLIPIYFYVAFYYLQNIPIQKKYESYRCLFISGTICQW 491
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.8 bits (49), Expect = 5.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NNENKAWNVLCILNVLHSLVDKSNIKKQLEVYAAGGDPD 238
NN+N VLC+ + HSL+ K+ + + A PD
Sbjct: 902 NNDNHC--VLCLQSASHSLMKKTVEGNWVHLICASWTPD 938
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 113 EDLNNENKAWNVLCILNVLHSL-VDKSNIKKQLEV 214
+ + ++ W +LC LN+L L IK ++V
Sbjct: 373 DHIREKDGVWGILCWLNILAGLNAQNPKIKTLIDV 407
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 86 TSKLSPAEIEDLNNENKA 139
+S LS +EIE N+NKA
Sbjct: 176 SSDLSSSEIESTENDNKA 193
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 23.0 bits (47), Expect = 9.9
Identities = 18/66 (27%), Positives = 23/66 (34%)
Frame = -2
Query: 270 SECLPNSPATESGSPPAAYTSSCFLMLDLSTRECNTLRIQSTFHALFSLFKSSISAGLSL 91
S LPN + E A S L + L R NT+ + F SS S
Sbjct: 107 SASLPNKTSYEQADTNATSKSLVDLPVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSA 166
Query: 90 EVRDLY 73
+ D Y
Sbjct: 167 SIEDTY 172
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 23.0 bits (47), Expect = 9.9
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Frame = +2
Query: 50 YQFQSFAQYRSRTSKLSPAEIEDLNNENKAW----NVLCILNVLH-SLVDKSN 193
Y +S S KL E + NEN W N+L +L H S D++N
Sbjct: 571 YYRESKEYIASLYEKLDRTERNNKENENNFWNLKFNLLTMLRSFHGSFTDETN 623
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 23.0 bits (47), Expect = 9.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 102 LLKSKI*TMRTRHGMYFVFLMYYILLLTNPTSRSN*RCMLLV 227
L+ S + M R +Y V LM YI+L N C+L+V
Sbjct: 155 LVISPLSEMIGRRIVYLVTLMIYIVLQIPCALAPNIACLLIV 196
>SPBC337.15c |coq7||ubiquinone biosynthesis protein
Coq7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 65 FAQYRSRTSKLSPAEIEDLNNENKAWN 145
F + RS ++ E+E LN + WN
Sbjct: 162 FKEIRSHLAEFRDDELEHLNTAVEGWN 188
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 23.0 bits (47), Expect = 9.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 32 LIDEFVYQFQSFAQYRSRTSKLSPAEIEDLNNENKAWNVLCILNVLHSLVD 184
L+++ V SFA++ + S +NN +N+LCI + LH V+
Sbjct: 265 LVNKSVQAICSFAEHYNLLRNPSYRGFLRINNGESIFNLLCIED-LHESVN 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,324,016
Number of Sequences: 5004
Number of extensions: 25313
Number of successful extensions: 71
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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