Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M20
(304 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712... 96 5e-21
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766... 90 4e-19
05_01_0217 + 1630083-1630205,1630467-1630710,1631695-1632508,163... 28 1.6
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 28 1.6
01_03_0194 + 13645418-13645790,13645879-13647653 27 2.8
07_03_0069 + 13041063-13041577,13041647-13042231,13042285-13042540 27 3.7
05_07_0227 - 28523385-28524278 27 3.7
05_01_0190 + 1366791-1366817,1367536-1367616,1367858-1367900,136... 27 3.7
02_01_0388 + 2812235-2815003 27 3.7
03_06_0620 - 35142280-35142294,35143149-35143294,35144826-35145045 26 4.9
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437... 26 4.9
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 26 4.9
08_02_0809 - 21426670-21426753,21427188-21427317,21427403-214274... 26 6.5
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 26 6.5
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 26 6.5
08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036 25 8.6
08_01_0132 + 1055977-1056483,1058083-1058186,1058330-1058385,105... 25 8.6
07_03_1129 + 24184785-24185561 25 8.6
03_01_0405 - 3140486-3140937,3141251-3141412,3141521-3141618,314... 25 8.6
01_06_0357 - 28668894-28669238,28669510-28669537,28669578-286696... 25 8.6
>01_01_0906 -
7124686-7124730,7124854-7124925,7125257-7125383,
7125424-7125572,7126126-7126465,7126759-7127090,
7127327-7127860
Length = 532
Score = 95.9 bits (228), Expect = 5e-21
Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Frame = +2
Query: 5 EVPDQWLWELIDEFVYQFQSFAQYRSRTSKLSPAEIEDLNNENKAWNVLCILNVLHSLVD 184
++P+QWLW+++DEFVYQFQSF QYR++ S E+ L +KAWNV +LN L +LV+
Sbjct: 135 QLPNQWLWDMVDEFVYQFQSFCQYRAKLKNKSDDELHQLKQFDKAWNVYGVLNYLQALVE 194
Query: 185 KSNIKKQLEVYAAGGDPDSVAGEF---GRHSLYKMLGYFSLVG 304
KS I + LE G + + + G ++ KMLGY+S++G
Sbjct: 195 KSMIAQILEREKEGLEQFTATDGYDYQGGSNVLKMLGYYSMIG 237
>05_03_0041 -
7662094-7662138,7662269-7662340,7663144-7663179,
7663356-7663449,7663533-7663681,7664525-7664864,
7666417-7666748,7667348-7667821
Length = 513
Score = 89.8 bits (213), Expect = 4e-19
Identities = 43/103 (41%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Frame = +2
Query: 5 EVPDQWLWELIDEFVYQFQSFAQYRSRTSKLSPAEIEDLNNENKAWNVLCILNVLHSLVD 184
++P+QWLW+++DEFVYQFQSF QYR++ + EI L ++AW+V +LN L +LV+
Sbjct: 115 QLPNQWLWDMVDEFVYQFQSFCQYRAKLKNKTHEEIALLKQYDQAWSVYGVLNYLKALVE 174
Query: 185 KSNIKKQLEVYAAGGDPDSVAGEF---GRHSLYKMLGYFSLVG 304
KS I + LE G + + + G ++ KMLGY+S++G
Sbjct: 175 KSMIGEILEREKVGLEQFTATDGYDYEGGSNVLKMLGYYSMIG 217
>05_01_0217 +
1630083-1630205,1630467-1630710,1631695-1632508,
1632775-1632844,1633007-1633239,1633345-1633564
Length = 567
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -3
Query: 188 ICQQENVIH*EYKVHSMPCSHCSNLRFQQGSV*RYETCIG---QKI-EIDKQIHQSIPRA 21
+ + E+ + E + M C+ +++ + V YE C+ +K+ E D + QS P
Sbjct: 92 LVKPEDCVRRERALTQMECAASLSIKLDKKHVEHYEVCVSELREKVAEFDSKASQSWPAT 151
Query: 20 IDQAP 6
I +P
Sbjct: 152 ITDSP 156
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 182 DKSNIKKQLEVYAAGGDPDSV-AGEFGRHS 268
D + IKK +++Y+A G DS+ +G FG++S
Sbjct: 168 DNNEIKKAVDMYSALGPSDSLDSGVFGQNS 197
>01_03_0194 + 13645418-13645790,13645879-13647653
Length = 715
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 110 IEDLNNENKAWNVLCIL--NVLHSLVDKSNIKKQLEVYAAGGD 232
++ + NENK WN+L ++ + N K + A GG+
Sbjct: 649 VDGIQNENKGWNMLAEFWSEMMLYVAPSDNTKAHAKAIARGGE 691
>07_03_0069 + 13041063-13041577,13041647-13042231,13042285-13042540
Length = 451
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -2
Query: 258 PNSPATESGSPPAAYTSSCFLMLDLSTRECNTLRIQSTFHAL 133
P + ++ + PP Y + +L + T ECN + + AL
Sbjct: 330 PGASSSPAPPPPHGYDPNASFILTMLTLECNPMNTSTRHEAL 371
>05_07_0227 - 28523385-28524278
Length = 297
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 251 RPPRSQDPHQQHTP 210
+PPR Q P QQH P
Sbjct: 75 KPPRQQHPQQQHPP 88
>05_01_0190 +
1366791-1366817,1367536-1367616,1367858-1367900,
1368104-1368182,1368291-1368450,1368565-1368692,
1369134-1369202,1369796-1369883,1370516-1370591,
1370767-1370840,1372635-1372742,1373783-1373944,
1374179-1374283,1374447-1374527,1374603-1375803,
1376654-1376750,1378086-1378160,1378461-1378623
Length = 938
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 258 PNSPATESGSPPAAYTSSCFLMLDLSTR---ECNTLRIQSTF 142
P P+TE+G P +S FL ++ R + N RI++ F
Sbjct: 812 PQIPSTETGIEPLTDAASAFLSTNIERRSGADLNPRRIENIF 853
>02_01_0388 + 2812235-2815003
Length = 922
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 119 LNNENKAWNVLCILNVLHSLVDKSNIKKQLEVYAAGGDPD 238
+ N KAW++ C ++ L D+SN L G+ D
Sbjct: 202 IENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLD 241
>03_06_0620 - 35142280-35142294,35143149-35143294,35144826-35145045
Length = 126
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 258 PNSPATESGSPPAAYTSSCF-LMLDLSTRECNTLRIQSTFHALFSLFKS 115
P+SP T+SG PP + + LD+S R + TF L LF+S
Sbjct: 28 PSSPPTKSGIPPRYDLDAKWDACLDISIRRVAYSTLGGTFAGLL-LFRS 75
>03_05_0086 -
20642873-20643033,20643384-20643504,20643698-20643744,
20643882-20643921,20644331-20644418,20644949-20645161,
20645589-20645628,20646332-20646416
Length = 264
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 303 PTKEKYP-SIL*SECLPNSPATESGSP 226
PT+ YP S+L S P+ P++ SGSP
Sbjct: 56 PTQPWYPPSVLGSSSHPSLPSSSSGSP 82
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +3
Query: 228 GILTPWRASLVDIHSTRCWDIFPWL 302
GI ++ +D+ CW +FPW+
Sbjct: 334 GIYELYQLDALDVSIMSCWILFPWV 358
>08_02_0809 -
21426670-21426753,21427188-21427317,21427403-21427452,
21428209-21428349,21428907-21429047,21429144-21429251
Length = 217
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 167 LHSLVDKSNIKKQLEVYAAGGDPDSVAGEFGR 262
LHS + S + LEV GGD S G++ R
Sbjct: 116 LHSHLHASPLSGNLEVSCFGGDGQSDTGDYWR 147
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 158 LNVLHSLVDKSNIKKQLEVYAAGGDPDSVAGEFGRHSLYKMLGY 289
L LH ++++ + AG DPD+ GE G SL++ L +
Sbjct: 62 LCALHLATWRNHLPIVRRLLDAGADPDARDGESGWSSLHRALHF 105
>05_07_0329 - 29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +2
Query: 158 LNVLHSLVDKSNIKKQLEVYAAGGDPDSVAGEFGRH 265
+ + H VD + +++ + G +PD FGRH
Sbjct: 1209 IEINHKQVDMATKGQKVAIKIIGSNPDEQQKSFGRH 1244
>08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036
Length = 420
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 173 SLVDKSNIKKQLEVYAAGGDPDSVA 247
+L DK++ +Q+E AAG +PD +A
Sbjct: 129 TLTDKNSHIRQMEERAAGTNPDQMA 153
>08_01_0132 +
1055977-1056483,1058083-1058186,1058330-1058385,
1058534-1058688,1058842-1058955,1059207-1059449
Length = 392
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 285 PSIL*SECLPNSPATESGSP-PAAYTSSC 202
PS+ P SP S P PAA+T+SC
Sbjct: 107 PSVRHYHYYPPSPTRSSSPPTPAAHTTSC 135
>07_03_1129 + 24184785-24185561
Length = 258
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 234 GSPPAAYTSSCFLMLDLSTRECNTLRIQSTFHA 136
GS + S+CFL L ++ R C+ R ++T H+
Sbjct: 55 GSTTWSSRSTCFLALSIADRSCSN-RSRNTAHS 86
>03_01_0405 -
3140486-3140937,3141251-3141412,3141521-3141618,
3141910-3142001,3142586-3142618
Length = 278
Score = 25.4 bits (53), Expect = 8.6
Identities = 7/19 (36%), Positives = 16/19 (84%)
Frame = +3
Query: 231 ILTPWRASLVDIHSTRCWD 287
+++ +R+ +++IH+TR WD
Sbjct: 79 VISIFRSRMLEIHTTRSWD 97
>01_06_0357 -
28668894-28669238,28669510-28669537,28669578-28669635,
28669836-28669916,28670395-28670526,28670609-28670926,
28672495-28673317
Length = 594
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 186 LSTRECNTLRIQSTFHALFSLFKSSIS 106
+STR+ TLR++ T + FS F S S
Sbjct: 272 VSTRKLATLRVKQTSGSYFSFFSSCSS 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,700,319
Number of Sequences: 37544
Number of extensions: 163558
Number of successful extensions: 539
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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