Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M19
(378 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 215 9e-57
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 215 9e-57
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 215 9e-57
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 62 1e-10
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 62 1e-10
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 54 3e-08
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 53 6e-08
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 38 0.002
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 38 0.002
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.007
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.007
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.007
U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical pr... 28 1.9
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 4.5
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 27 4.5
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 4.5
U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical pr... 27 5.9
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 27 5.9
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 27 5.9
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 26 7.8
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 26 7.8
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 215 bits (525), Expect = 9e-57
Identities = 98/125 (78%), Positives = 109/125 (87%)
Frame = +1
Query: 1 ARGKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPW 180
A KMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPW
Sbjct: 117 ACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPW 176
Query: 181 FKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG 360
FKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETG
Sbjct: 177 FKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETG 236
Query: 361 ILKPG 375
I+KPG
Sbjct: 237 IIKPG 241
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 215 bits (525), Expect = 9e-57
Identities = 98/125 (78%), Positives = 109/125 (87%)
Frame = +1
Query: 1 ARGKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPW 180
A KMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPW
Sbjct: 151 ACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPW 210
Query: 181 FKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG 360
FKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETG
Sbjct: 211 FKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETG 270
Query: 361 ILKPG 375
I+KPG
Sbjct: 271 IIKPG 275
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 215 bits (525), Expect = 9e-57
Identities = 98/125 (78%), Positives = 109/125 (87%)
Frame = +1
Query: 1 ARGKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPW 180
A KMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPW
Sbjct: 151 ACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPW 210
Query: 181 FKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG 360
FKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETG
Sbjct: 211 FKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETG 270
Query: 361 ILKPG 375
I+KPG
Sbjct: 271 IIKPG 275
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 62.5 bits (145), Expect = 1e-10
Identities = 36/121 (29%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Frame = +1
Query: 1 ARGKMDSTEPPYSESRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMP 177
A K+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++
Sbjct: 314 AVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELD 368
Query: 178 WFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVET 357
W+ +G CL+E +D+ + P P+D LR+ + DV K+ V G++E+
Sbjct: 369 WY------------DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIES 416
Query: 358 G 360
G
Sbjct: 417 G 417
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 62.5 bits (145), Expect = 1e-10
Identities = 36/121 (29%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Frame = +1
Query: 1 ARGKMDSTEPPYSESRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMP 177
A K+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++
Sbjct: 332 AVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELD 386
Query: 178 WFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVET 357
W+ +G CL+E +D+ + P P+D LR+ + DV K+ V G++E+
Sbjct: 387 WY------------DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIES 434
Query: 358 G 360
G
Sbjct: 435 G 435
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 54.0 bits (124), Expect = 3e-08
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Frame = +1
Query: 10 KMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFK 186
KMD + E RF+EI+ +++ +++K+G+NP + +VP SG G + + T
Sbjct: 256 KMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSE--G 313
Query: 187 GWLVERKEGKAEGKCLIEALDAILPP-ARPTDKALRLPLQDVYKIGGIGTVPVGRVETGI 363
W G C IE +D +LP R + +R + + Y +GTV +G++E+G
Sbjct: 314 NWY--------SGPCFIEFIDVLLPSYKRDFNGPVRCTVAEKY--SEMGTVIIGKMESGC 363
Query: 364 LKPG 375
++ G
Sbjct: 364 VQKG 367
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 53.2 bits (122), Expect = 6e-08
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 56 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVSA 232
+S +S +SR+ TI RL LS TE TC P CHGSRDG L+ +KE L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETLPERP 210
Query: 233 LLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLE 331
R TPS A LT SVF + T+S LE
Sbjct: 211 SSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELE 243
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 232 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG 375
LI+ALD++ P R +P+ I G GTV VG +E G+LK G
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKG 269
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 232 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG 375
LI+ALD++ P R +P+ I G GTV VG +E G+LK G
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKG 269
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.3 bits (80), Expect = 0.007
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 211 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG 375
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRG 281
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.007
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 211 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG 375
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRG 282
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.007
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 211 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG 375
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRG 282
>U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical
protein F58F9.7 protein.
Length = 667
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 92 LVTIRLPSLSYPFLAGTEITCWSRPPKC-HGSRDGWLSVKKERLKVSALL 238
++ +R P ++ L G I P C G +GW+ K R +SALL
Sbjct: 206 VIQVRCPR-TFQTLPGITIGDMGSKPGCWQGVENGWMEFKNHRAPLSALL 254
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 19 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 135
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform c protein.
Length = 1099
Score = 27.1 bits (57), Expect = 4.5
Identities = 21/94 (22%), Positives = 40/94 (42%)
Frame = -2
Query: 353 STLPTGTVPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPSLRSTNHPLNHG 174
+T+P T+ YTS + R+ + + +H S L+S++ LN+
Sbjct: 115 TTVPETTIHRRSEEYTSYQPRKSKEEILQVNSASRPALPRQHSASTVSPLQSSSDELNND 174
Query: 173 ILVDGSNMLSPCQPEMGTKATAAGL*PIFLM*EE 72
+D + SP E ++T + P ++ EE
Sbjct: 175 SGIDNRTVGSPSTSEFSPRSTDLFVSPKSIIDEE 208
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 19 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 135
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical
protein F53B3.6 protein.
Length = 321
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 132 RNGYESDGSRIVTNFLDVGRDFLLDFLKSRLT 37
RN Y +DG ++ D+GRD DF S T
Sbjct: 101 RNEYPNDGGVVIPIRRDIGRDPQYDFRSSPQT 132
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 26.6 bits (56), Expect = 5.9
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -2
Query: 359 PVSTLPTGTVPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPSLRSTNHPLN 180
P LP+GT P P ++T R A SV M R S + F + PL+
Sbjct: 581 PEIPLPSGTQPTPDSVWTKKAKERAAASVTVPKSPMQRRESEEQKMNRFYPISKPTAPLD 640
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 26.6 bits (56), Expect = 5.9
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -2
Query: 359 PVSTLPTGTVPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPSLRSTNHPLN 180
P LP+GT P P ++T R A SV M R S + F + PL+
Sbjct: 778 PEIPLPSGTQPTPDSVWTKKAKERAAASVTVPKSPMQRRESEEQKMNRFYPISKPTAPLD 837
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 246 RRHPSACSPH*QGSPSSPARRIQNRR 323
+RHP+ QG P P +RIQN +
Sbjct: 542 QRHPNEGQQFQQGPPPPPPQRIQNHQ 567
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 246 RRHPSACSPH*QGSPSSPARRIQNRR 323
+RHP+ QG P P +RIQN +
Sbjct: 542 QRHPNEGQQFQQGPPPPPPQRIQNHQ 567
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.137 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,102,349
Number of Sequences: 27780
Number of extensions: 219073
Number of successful extensions: 614
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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