Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M18
(293 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 109 8e-26
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 102 1e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 60 9e-11
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 52 1e-08
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.062
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 0.14
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 2.3
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 3.1
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 24 5.3
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 23 7.1
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 23 7.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 23 7.1
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 23 7.1
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 23 7.1
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 23 7.1
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 23 9.3
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 23 9.3
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch... 23 9.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 23 9.3
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 109 bits (262), Expect = 8e-26
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = +1
Query: 85 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDD*FNTFFSETGAGK 264
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 265 HVPRAVFVD 291
+VPR+++VD
Sbjct: 61 YVPRSIYVD 69
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 102 bits (244), Expect = 1e-23
Identities = 51/74 (68%), Positives = 56/74 (75%), Gaps = 5/74 (6%)
Frame = +1
Query: 85 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDD*FNTFFSE 249
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 250 TGAGKHVPRAVFVD 291
TG GK VPR+++VD
Sbjct: 60 TGQGKFVPRSIYVD 73
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 59.7 bits (138), Expect = 9e-11
Identities = 28/68 (41%), Positives = 42/68 (61%)
Frame = +1
Query: 88 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDD*FNTFFSETGAGKH 267
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 268 VPRAVFVD 291
+PRA+ +D
Sbjct: 61 IPRAILID 68
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 52.4 bits (120), Expect = 1e-08
Identities = 27/69 (39%), Positives = 35/69 (50%)
Frame = +1
Query: 85 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDD*FNTFFSETGAGK 264
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 265 HVPRAVFVD 291
+VPRAV VD
Sbjct: 59 YVPRAVLVD 67
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.062
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 125 SRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTDSTRSSARPELASTFPVPSSSI 292
S S + + + ST S+L ++PS T+ ST SSA P S+ + SSS+
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSV 215
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 29.1 bits (62), Expect = 0.14
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +2
Query: 104 YTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTDSTRSSARPELASTFPVPS 283
++ A+ + S+ + S + Q +PSGVE T+++R++A+ + ST + S
Sbjct: 12 FSYARALASSQSNKSNSTKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTESTGKITS 71
Query: 284 SS 289
+
Sbjct: 72 EA 73
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 2.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 214 PRWSCQLASDHQVGCRAQGNTAPSRHFRSGLR 119
P SC+L S+H+ C + N++ S + + R
Sbjct: 110 PHLSCELPSEHREKCLKRRNSSLSSNLHANKR 141
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 24.6 bits (51), Expect = 3.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 221 TTDSTRSSARPELASTFPVP 280
T D+ R S RP+++ T P+P
Sbjct: 486 TFDADRPSVRPDISITGPIP 505
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 5.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 174 DAVLKAIQLPAGISDLDSGLANV 106
+AVLK I GI + D+GLA +
Sbjct: 55 EAVLKRINDTVGIKESDTGLAPI 77
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 23.4 bits (48), Expect = 7.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -3
Query: 192 HLTIRLDAVLKAIQLPAG-ISDLDSGLANVYRDALTHFVLSF 70
H I+ D L I ++ +D GLA YRD TH + +
Sbjct: 128 HRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPY 169
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 23.4 bits (48), Expect = 7.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 145 WELYCLEHGIQPDGQMPTDKTI 210
WELYC E G +M KTI
Sbjct: 289 WELYCQEAGGIIGDEMGLGKTI 310
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 23.4 bits (48), Expect = 7.1
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 77 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTDST-RSSARP 253
N+ S +T + + S +P S S+ S+++ T SG TT SSA
Sbjct: 642 NSTVAPTSTFTSSGFNTTSGLPTSSASTPSSNSSIVPTSTFTS-SGFNTTSGLPTSSAST 700
Query: 254 ELASTFPVPSSS 289
L+++ P+S+
Sbjct: 701 PLSNSTVAPTST 712
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 23.4 bits (48), Expect = 7.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 263 LPAPVSLKNVLNQSSPPPMVLSVG 192
+P P NV++Q PPP S G
Sbjct: 138 VPPPPVRPNVMSQMPPPPSYSSSG 161
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 23.4 bits (48), Expect = 7.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 93 VHLCTRWPSRSPDRK 137
+H WPSR+P RK
Sbjct: 3 LHDAYHWPSRTPSRK 17
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 23.4 bits (48), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 33 RLINLFYLHLSSKNSIQNA*VHLC 104
+L N+F H ++ IQ A H+C
Sbjct: 199 QLCNIFVNHSKAREDIQKAVNHIC 222
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 23.0 bits (47), Expect = 9.3
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +3
Query: 6 RLLTGRAERRLINLFY 53
R+L GRA+ ++++FY
Sbjct: 738 RILVGRADHEILDVFY 753
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 23.0 bits (47), Expect = 9.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -3
Query: 174 DAVLKAIQLPAGISDLDS 121
DAV KAIQL SDL S
Sbjct: 241 DAVSKAIQLVKSTSDLGS 258
>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 207
Score = 23.0 bits (47), Expect = 9.3
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = -2
Query: 241 RTC*ISRLHPRWSCQLASDHQVGCRAQGNTAPSRHFRSGLRLGQRVQRCTHAFCIEFFE 65
R C H + + + Q +GN+ P R + G+R R + T+ EF E
Sbjct: 57 RLCSNIESHDETDTEWSKNTQWSMYLEGNSEPKREDKCGIRPVNRA-KLTNGSVTEFVE 114
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.0 bits (47), Expect = 9.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 257 APVSLKNVLNQSSPPPM 207
APVS+ +N +S PP+
Sbjct: 276 APVSMNPAINSTSKPPL 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,241,447
Number of Sequences: 5004
Number of extensions: 23708
Number of successful extensions: 78
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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