Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M17
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   168   1e-42
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   166   6e-42
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773...    28   3.0  
02_02_0343 + 9163976-9165220                                           27   5.2  
04_04_1631 - 34919197-34919205,34919865-34920204,34920418-349207...    27   6.9  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  168 bits (409), Expect = 1e-42
 Identities = 78/109 (71%), Positives = 90/109 (82%)
 Frame = +2

Query: 62  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 241
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 242 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGLLLARRLL 388
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTGLLLARR+L
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVL 108


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  166 bits (403), Expect = 6e-42
 Identities = 77/109 (70%), Positives = 89/109 (81%)
 Frame = +2

Query: 62  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 241
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 242 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGLLLARRLL 388
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTGLLLARR+L
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVL 108


>08_02_1410 -
           26876243-26876497,26877129-26877239,26877240-26877324,
           26877620-26877672,26878318-26878440,26878514-26878597,
           26878708-26878773,26879512-26879584,26879854-26879888,
           26879970-26880212
          Length = 375

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 185 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 307
           +YNT +YR +  +S K V C+ +   +  E DH+   A S  L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316


>02_02_0343 + 9163976-9165220
          Length = 414

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 367 QTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVITLN 263
           Q+ A+ S++ S THL  +  E + V   D +ITLN
Sbjct: 209 QSMALLSNLTSLTHLTLLECEDLTVDGFDPLITLN 243


>04_04_1631 -
           34919197-34919205,34919865-34920204,34920418-34920726,
           34920781-34921307,34921700-34921852,34922102-34922186,
           34922360-34922364
          Length = 475

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 377 LPATDQCSRQQHS*SNPP-*YHSVGVHESRQHR 282
           L +T  CSR++    NPP   H    HE ++HR
Sbjct: 69  LSSTASCSRKEAKVDNPPHGQHDNVTHEQQRHR 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,497,707
Number of Sequences: 37544
Number of extensions: 196641
Number of successful extensions: 434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)