Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M17
(388 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 218 4e-57
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 216 2e-56
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 216 2e-56
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 216 2e-56
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 216 2e-56
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 216 2e-56
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 214 1e-55
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 191 6e-49
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 113 2e-25
AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein. 29 6.9
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 218 bits (533), Expect = 4e-57
Identities = 96/114 (84%), Positives = 110/114 (96%)
Frame = +2
Query: 47 IF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLS 226
+F +MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++
Sbjct: 4 LFRRMGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVT 63
Query: 227 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGLLLARRLL 388
N+D+ CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTGLLLARRLL
Sbjct: 64 NRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 117
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 216 bits (527), Expect = 2e-56
Identities = 95/110 (86%), Positives = 107/110 (97%)
Frame = +2
Query: 59 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 238
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 239 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGLLLARRLL 388
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTGLLLARRLL
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 110
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 216 bits (527), Expect = 2e-56
Identities = 95/110 (86%), Positives = 107/110 (97%)
Frame = +2
Query: 59 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 238
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 239 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGLLLARRLL 388
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTGLLLARRLL
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 110
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 216 bits (527), Expect = 2e-56
Identities = 95/110 (86%), Positives = 107/110 (97%)
Frame = +2
Query: 59 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 238
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 239 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGLLLARRLL 388
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTGLLLARRLL
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 110
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 216 bits (527), Expect = 2e-56
Identities = 95/110 (86%), Positives = 107/110 (97%)
Frame = +2
Query: 59 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 238
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 239 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGLLLARRLL 388
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTGLLLARRLL
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 110
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 216 bits (527), Expect = 2e-56
Identities = 95/110 (86%), Positives = 107/110 (97%)
Frame = +2
Query: 59 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 238
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 239 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGLLLARRLL 388
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTGLLLARRLL
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 110
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 214 bits (522), Expect = 1e-55
Identities = 94/110 (85%), Positives = 106/110 (96%)
Frame = +2
Query: 59 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 238
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 239 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGLLLARRLL 388
CQ+AY+RIEGD IVCA Y+HELP+YG+KVGLTNYAAAYCTGLLLARRLL
Sbjct: 61 ICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 110
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 191 bits (466), Expect = 6e-49
Identities = 83/98 (84%), Positives = 95/98 (96%)
Frame = +2
Query: 59 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 238
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 239 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAA 352
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAA
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAA 98
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 113 bits (271), Expect = 2e-25
Identities = 48/60 (80%), Positives = 58/60 (96%)
Frame = +2
Query: 209 LIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGLLLARRLL 388
+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTGLLLARRLL
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 60
>AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.
Length = 4169
Score = 28.7 bits (61), Expect = 6.9
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +2
Query: 56 KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKD 235
K F+ + KNK K+ ++ +R + +KR ++K K YRL +L K
Sbjct: 4099 KRVFLAIQKNKPISKKEMIQRSKRIYEQLPEVQKKR--EEEKRKSEYKSYRLRAQLYKKR 4156
Query: 236 VTCQVAYSRIEGD 274
VT Q+ ++ D
Sbjct: 4157 VTNQLLGRKVPWD 4169
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,822,065
Number of Sequences: 237096
Number of extensions: 1151631
Number of successful extensions: 6352
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6352
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2641190740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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