Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M16
(381 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 196 1e-51
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 196 1e-51
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 196 1e-51
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 54 6e-09
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 48 4e-07
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 44 8e-06
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.25
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 1.7
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 2.3
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 5.3
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 25 5.3
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom... 25 5.3
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 25 5.3
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 5.3
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 24 7.0
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 24 7.0
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 7.0
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 24 7.0
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 24 9.3
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 196 bits (478), Expect = 1e-51
Identities = 85/121 (70%), Positives = 101/121 (83%)
Frame = +2
Query: 17 PAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDK 196
P V FVP+SG+ GDNM+EP+T MPW++GW E K G +GK L+EA+D+I PPARPTDK
Sbjct: 183 PKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDK 242
Query: 197 ALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVP 376
LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +P
Sbjct: 243 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLP 302
Query: 377 G 379
G
Sbjct: 303 G 303
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 196 bits (478), Expect = 1e-51
Identities = 85/121 (70%), Positives = 101/121 (83%)
Frame = +2
Query: 17 PAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDK 196
P V FVP+SG+ GDNM+EP+T MPW++GW E K G +GK L+EA+D+I PPARPTDK
Sbjct: 183 PKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDK 242
Query: 197 ALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVP 376
LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +P
Sbjct: 243 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLP 302
Query: 377 G 379
G
Sbjct: 303 G 303
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 196 bits (478), Expect = 1e-51
Identities = 85/121 (70%), Positives = 101/121 (83%)
Frame = +2
Query: 17 PAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDK 196
P V FVP+SG+ GDNM+EP+T MPW++GW E K G +GK L+EA+D+I PPARPTDK
Sbjct: 183 PKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDK 242
Query: 197 ALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVP 376
LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +P
Sbjct: 243 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLP 302
Query: 377 G 379
G
Sbjct: 303 G 303
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 54.4 bits (125), Expect = 6e-09
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Frame = +2
Query: 146 LIEALDAILP-PARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGT--VVVFAPAN 316
L+EA+D+ + P R TD + ++DV+ I G GTV GRVE G LK G +V ++
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSH 293
Query: 317 ITTEVKSVEMHHEALQEAVPG 379
+ T V +EM + L AV G
Sbjct: 294 LKTTVTGIEMFKKQLDAAVAG 314
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 48.4 bits (110), Expect = 4e-07
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +2
Query: 26 VAFVPISGWHGDNMLEPSTK--MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKA 199
V FVPIS G N+++ + W+KG L+ ALD ++PP +P K
Sbjct: 357 VHFVPISAISGTNLIQKDSSDLYKWYKG------------PTLLSALDQLVPPEKPYRKP 404
Query: 200 LRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSV 340
LRL + DVY+ TV GRVE G ++ V+ + VK+V
Sbjct: 405 LRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNV 450
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 44.0 bits (99), Expect = 8e-06
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Frame = +2
Query: 26 VAFVPISGWHGDNMLE--PSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKA 199
V ++P+S + G N+ + S+ PW+ +G L+E LD++ R +
Sbjct: 421 VKYMPVSAYTGQNVKDRVDSSVCPWY------------QGPSLLEYLDSMTHLERKVNAP 468
Query: 200 LRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSV 340
+P+ YK +GT+ G++E G +K + V+ P N T EV ++
Sbjct: 469 FIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAI 513
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.1 bits (62), Expect = 0.25
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -1
Query: 369 ASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSC 214
ASC S + + +SVV+ + +T TV + VST TGTV +P +C
Sbjct: 75 ASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVAC 124
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 1.7
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -3
Query: 226 VYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFGGRLQHVI 59
V++ Q + S++ G + + V LNKAF+ S + F + S P HF ++ +V+
Sbjct: 1522 VWLSQAYSPSVLQGTT---ENVAFLNKAFSASANLFDVLPVSNTPSHF-SKMDYVL 1573
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 342 STDLTSVVMLAGAKTTTVPGFRIPVSTLPTGT--VPIPPIL 226
++DLT+ L +T+ + + + PT T +PIP +L
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 24.6 bits (51), Expect = 5.3
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 104 WLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 211
+L+ + K G E++DA+LP + +L +P
Sbjct: 628 YLLSSENAKDTGDIKSESIDAVLPTLETSSPSLSIP 663
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 5.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 9 GRGRLPSLSYPFL--AGTEITCWSRPPKCHGSRDGWLSV 119
G G LPS S+PF + I W P + S D ++SV
Sbjct: 270 GNGTLPSGSFPFWDEVASAIAAW--PEIVNSSYDAYVSV 306
>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 24.6 bits (51), Expect = 5.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 207 FPCKTYTKSAVLEQYPW 257
FPCK S L QYP+
Sbjct: 173 FPCKASAHSVPLSQYPY 189
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 5.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 274 YPKAWYCCRFCPC*HH 321
YPK CC+FC HH
Sbjct: 147 YPKGG-CCKFCSSVHH 161
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.6 bits (51), Expect = 5.3
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = -3
Query: 346 HFHGLDFSSDVSRGKNDNSTRL*DTSFNSTHGYCSNTADFVYVLQG-----KTESLVSGA 182
++H D+ ++++ N ++T++ ++N + A Q +T L S +
Sbjct: 261 NYHLFDYYNEIASSPNPSTTKI---TYNPPKLPMKDFATLPIGYQSTCDSDETSELSSTS 317
Query: 181 SRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFG 80
S + VEGLN S N PS + HFG
Sbjct: 318 SEQTSDVEGLNAYNNLGASSDIENAPSSQ-LHFG 350
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 143 CLIEALDAILPPARPTDKALRLPLQD 220
CLIE +AILP +DK L + +
Sbjct: 1349 CLIEKSNAILPHGSTSDKLFLLEIPE 1374
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 24.2 bits (50), Expect = 7.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 56 GDNMLEPSTKMPWFKGWLVERKEGK 130
GD +L + PW+ L+ RKE K
Sbjct: 53 GDRILVKAPGYPWWPALLLRRKETK 77
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 24.2 bits (50), Expect = 7.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 161 DAILPPARPTDKALRLPLQDVYKIGGIGTVPV 256
+ I P A+P+D+ L + + +GT+PV
Sbjct: 505 ERIEPEAKPSDETLTVRSSRDLSVHNVGTLPV 536
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 24.2 bits (50), Expect = 7.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 62 NMLEPSTKMPWF 97
N LEP TK PW+
Sbjct: 148 NFLEPLTKTPWY 159
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 87 CHGSRDGWLSVKKERLKVNALLRPSTPSFRLL 182
C GS G+ + E +LL P+ SFR L
Sbjct: 994 CVGSFKGFDIISLENAVFQSLLNPADTSFRFL 1025
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,410
Number of Sequences: 5004
Number of extensions: 35232
Number of successful extensions: 125
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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