Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M16
(381 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 213 3e-56
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 213 3e-56
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 213 3e-56
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 52 1e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 50 6e-07
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 50 6e-07
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 40 5e-04
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 40 5e-04
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 40 5e-04
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 38 0.002
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 38 0.002
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 36 0.010
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.052
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 33 0.052
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 31 0.37
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 0.37
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 28 2.0
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 28 2.0
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 28 2.6
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 28 2.6
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 28 2.6
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 27 3.4
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 3.4
U49829-1|AAA93382.1| 138|Caenorhabditis elegans Hypothetical pr... 27 6.0
U43283-3|AAC69024.2| 880|Caenorhabditis elegans Hypothetical pr... 27 6.0
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 27 6.0
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 27 6.0
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 27 6.0
AC025726-25|AAK73927.2| 409|Caenorhabditis elegans Hypothetical... 27 6.0
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 26 7.9
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 26 7.9
AF039042-10|AAC48252.2| 136|Caenorhabditis elegans Hypothetical... 26 7.9
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 26 7.9
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei... 26 7.9
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot... 26 7.9
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 213 bits (521), Expect = 3e-56
Identities = 97/121 (80%), Positives = 107/121 (88%)
Frame = +2
Query: 17 PAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDK 196
P AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+
Sbjct: 151 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDR 210
Query: 197 ALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVP 376
LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVP
Sbjct: 211 PLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVP 270
Query: 377 G 379
G
Sbjct: 271 G 271
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 213 bits (521), Expect = 3e-56
Identities = 97/121 (80%), Positives = 107/121 (88%)
Frame = +2
Query: 17 PAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDK 196
P AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+
Sbjct: 185 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDR 244
Query: 197 ALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVP 376
LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVP
Sbjct: 245 PLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVP 304
Query: 377 G 379
G
Sbjct: 305 G 305
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 213 bits (521), Expect = 3e-56
Identities = 97/121 (80%), Positives = 107/121 (88%)
Frame = +2
Query: 17 PAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDK 196
P AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+
Sbjct: 185 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDR 244
Query: 197 ALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVP 376
LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVP
Sbjct: 245 PLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVP 304
Query: 377 G 379
G
Sbjct: 305 G 305
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 52.0 bits (119), Expect = 1e-07
Identities = 30/64 (46%), Positives = 34/64 (53%)
Frame = +3
Query: 54 TEITCWSRPPKCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSVFPCKTYTKS 233
TE TC P CHGSRDG L+ +KE L R TPS A LT SVF + T+S
Sbjct: 180 TETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCTRS 239
Query: 234 AVLE 245
LE
Sbjct: 240 EELE 243
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 50.0 bits (114), Expect = 6e-07
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +2
Query: 32 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 211
FVP+SG+ G+N+++ ++ W+ +G CL+E +D+ + P P+D LR+
Sbjct: 350 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 396
Query: 212 LQDVYKIGGIGTVPVGRVETG-ILKPGTVVVFAPANITT 325
+ DV K+ V G++E+G + K V + + T
Sbjct: 397 ISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAAT 435
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 50.0 bits (114), Expect = 6e-07
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +2
Query: 32 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 211
FVP+SG+ G+N+++ ++ W+ +G CL+E +D+ + P P+D LR+
Sbjct: 368 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 414
Query: 212 LQDVYKIGGIGTVPVGRVETG-ILKPGTVVVFAPANITT 325
+ DV K+ V G++E+G + K V + + T
Sbjct: 415 ISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAAT 453
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 40.3 bits (90), Expect = 5e-04
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Frame = +2
Query: 125 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 298
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 285
Query: 299 VFAPANITTEVKSV----EMHHEALQEAVPG 379
+ T VKSV E + + +A PG
Sbjct: 286 IVGGTKDGTTVKSVISGLESFRKTVDQAEPG 316
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 40.3 bits (90), Expect = 5e-04
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Frame = +2
Query: 125 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 298
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 299 VFAPANITTEVKSV----EMHHEALQEAVPG 379
+ T VKSV E + + +A PG
Sbjct: 287 IVGGTKDGTTVKSVISGLESFRKTVDQAEPG 317
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 40.3 bits (90), Expect = 5e-04
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Frame = +2
Query: 125 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 298
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 299 VFAPANITTEVKSV----EMHHEALQEAVPG 379
+ T VKSV E + + +A PG
Sbjct: 287 IVGGTKDGTTVKSVISGLESFRKTVDQAEPG 317
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 146 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVV 298
LI+ALD++ P R +P+ I G GTV VG +E G+LK G V
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKV 272
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 146 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVV 298
LI+ALD++ P R +P+ I G GTV VG +E G+LK G V
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKV 272
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 35.9 bits (79), Expect = 0.010
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 137 GKCLIEALDAILPP-ARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPA 313
G C IE +D +LP R + +R + + Y +GTV +G++E+G ++ G +V P
Sbjct: 318 GPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMPN 375
Query: 314 NITTEVKSVEMHHEALQEAVPG 379
+V + + V G
Sbjct: 376 KQPVQVLQIWADDVETERVVAG 397
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 33.5 bits (73), Expect = 0.052
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +2
Query: 167 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEM 346
I P R + + + + I G GTV G V G+L+ T + F N VK++E
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 250
Query: 347 HHEALQEAVPG 379
+ + + G
Sbjct: 251 WKQRVGQVAAG 261
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 33.5 bits (73), Expect = 0.052
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +2
Query: 167 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEM 346
I P R + + + + I G GTV G V G+L+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 347 HHEALQEAVPG 379
+ + + G
Sbjct: 210 WKQRVGQVAAG 220
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 30.7 bits (66), Expect = 0.37
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 375 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 226
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 593
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 348 CISTDL-TSVVMLAGAKTTTVPGFRIPVSTLPTGTVP--IPPILYT 220
CIS TS + T+P ++P+ TLP T P +PP+ T
Sbjct: 332 CISVPAPTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQIT 377
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 30.7 bits (66), Expect = 0.37
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 375 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 226
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 690
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 348 CISTDL-TSVVMLAGAKTTTVPGFRIPVSTLPTGTVP--IPPILYT 220
CIS TS + T+P ++P+ TLP T P +PP+ T
Sbjct: 429 CISVPAPTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQIT 474
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 363 CRASWCISTDLTSVVMLAGAKTTTV----PGFRIPVSTLPTGTVP 241
CR CI+T +T + + V PG+ +STLPT +P
Sbjct: 55 CRMEKCIATGMTMCKVQGNREKNKVRGYYPGYLPVISTLPTSVIP 99
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 372 TASCRASWCISTDLTSVVMLAGAKTTTVPGFR--IPVSTLPTGTVPIPPILY 223
+ S R S +S D T V + +TVP + VST PT +PPI Y
Sbjct: 49 STSERTSRSVSPDSTPVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -1
Query: 363 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 184
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 183 RAG 175
+ G
Sbjct: 273 KEG 275
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -1
Query: 363 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 184
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 183 RAG 175
+ G
Sbjct: 273 KEG 275
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.9 bits (59), Expect = 2.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 277 PKAWYCCRFCP 309
P W CCRFCP
Sbjct: 872 PPQWECCRFCP 882
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 27.9 bits (59), Expect = 2.6
Identities = 8/35 (22%), Positives = 21/35 (60%)
Frame = +2
Query: 212 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN 316
+ D+Y + G+GT+ G + +G ++ +++ P +
Sbjct: 378 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 412
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 2.6
Identities = 8/35 (22%), Positives = 21/35 (60%)
Frame = +2
Query: 212 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN 316
+ D+Y + G+GT+ G + +G ++ +++ P +
Sbjct: 377 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 411
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 69 WSRPP-KCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSV 206
WS P K GS+D W + R +N+ R S + R + +RLSV
Sbjct: 6 WSATPIKMVGSQDSWGTPPHYRSSLNSNYRDSPANSRNTSARSRLSV 52
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -3
Query: 247 CSNTADFVYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSL 98
CS T DF+ ++ ++ S + D V ++ ++ +++F+TL+ PSL
Sbjct: 80 CSTTNDFIINIEHSSDKKFSRLLQ--DLVSRDSRTYSKAINFYTLDDPSL 127
>U49829-1|AAA93382.1| 138|Caenorhabditis elegans Hypothetical
protein F27D9.3 protein.
Length = 138
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +2
Query: 113 ERKEGKAEGKCLIEALDAILPPARPTDKA-LRLPLQ 217
E+K+GK + +C+ EA DA+ RP+D+ LR+ L+
Sbjct: 91 EKKQGK-KNECVREADDAVDARPRPSDRGRLRVLLE 125
>U43283-3|AAC69024.2| 880|Caenorhabditis elegans Hypothetical
protein T25G12.6 protein.
Length = 880
Score = 26.6 bits (56), Expect = 6.0
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = -1
Query: 348 CISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSCRGRRRALS---VGRA 178
C S ++++ +G TTV P +++PTG P + TS R
Sbjct: 194 CRSVSDSTLITTSGPSGTTVTVPTTPCASVPTGPTKTPVTVPTSTGSVSRETKSPVTANP 253
Query: 177 GGRMASRASIRHLPSAFPSLRSTNHP 100
G +++ S + + S RST P
Sbjct: 254 GSTVSTSLSSKPVTVVTQSPRSTTTP 279
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 26.6 bits (56), Expect = 6.0
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -1
Query: 273 PVSTLPTGTVPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPSLRSTNHPLN 94
P LP+GT P P ++T R A SV M R S + F + PL+
Sbjct: 581 PEIPLPSGTQPTPDSVWTKKAKERAAASVTVPKSPMQRRESEEQKMNRFYPISKPTAPLD 640
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 26.6 bits (56), Expect = 6.0
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -1
Query: 273 PVSTLPTGTVPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPSLRSTNHPLN 94
P LP+GT P P ++T R A SV M R S + F + PL+
Sbjct: 778 PEIPLPSGTQPTPDSVWTKKAKERAAASVTVPKSPMQRRESEEQKMNRFYPISKPTAPLD 837
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 281 KPGTVVVFAPANITTEVKSVEMHHEALQEAVPG 379
KPGT+ F P ITTE K H L+ + G
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDG 388
>AC025726-25|AAK73927.2| 409|Caenorhabditis elegans Hypothetical
protein Y71G12B.26 protein.
Length = 409
Score = 26.6 bits (56), Expect = 6.0
Identities = 20/80 (25%), Positives = 33/80 (41%)
Frame = -1
Query: 246 VPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPSLRSTNHPLNHGILVDGSN 67
+P+ T C G + +G G R A A+ S ++ P HG++V +
Sbjct: 311 MPVQVAAATICIGELSSQLMGAIGKRKAGTAASVLRMSQLAAILLV--PFVHGMIVPHHD 368
Query: 66 MLSPCQPEMGTKATAAGLVR 7
++S C A GLV+
Sbjct: 369 VVSLCVMSAAISGGAVGLVK 388
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform c protein.
Length = 1099
Score = 26.2 bits (55), Expect = 7.9
Identities = 18/81 (22%), Positives = 34/81 (41%)
Frame = -1
Query: 267 STLPTGTVPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPSLRSTNHPLNHG 88
+T+P T+ YTS + R+ + + +H S L+S++ LN+
Sbjct: 115 TTVPETTIHRRSEEYTSYQPRKSKEEILQVNSASRPALPRQHSASTVSPLQSSSDELNND 174
Query: 87 ILVDGSNMLSPCQPEMGTKAT 25
+D + SP E ++T
Sbjct: 175 SGIDNRTVGSPSTSEFSPRST 195
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 160 RRHPSACSPH*QGSPSSPARRIQNRR 237
+RHP+ QG P P +RIQN +
Sbjct: 542 QRHPNEGQQFQQGPPPPPPQRIQNHQ 567
>AF039042-10|AAC48252.2| 136|Caenorhabditis elegans Hypothetical
protein ZK697.8 protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 102 DGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLEQYPWVE 263
+GW ++ + + N + +P F L+ RL YT V YP+VE
Sbjct: 54 NGWTNIGSQFTQDNGRVDWVSPDFTLIPGTYRLVYITEPYYTAKNVESFYPYVE 107
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 160 RRHPSACSPH*QGSPSSPARRIQNRR 237
+RHP+ QG P P +RIQN +
Sbjct: 542 QRHPNEGQQFQQGPPPPPPQRIQNHQ 567
>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
protein.
Length = 1908
Score = 26.2 bits (55), Expect = 7.9
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Frame = -3
Query: 307 GKNDNSTRL*DTSFNSTHGYC----SN--TADFVYVLQGKTESLVS--GASRRKDGVEGL 152
GK+ NS DT +++ Y SN TA + + T + V G K +E
Sbjct: 392 GKDVNSKIGGDTPISTSATYVMEDSSNLLTAIAINTTRSSTVAFVGTQGGQLHKILIESK 451
Query: 151 NKAFTFSLSFFTLNQPSLEPWHFGGRLQHV-ISVPAR 44
A ++ T N+P L FGG +HV I P++
Sbjct: 452 RSAEKYATEMLTDNEPILSDMEFGGDGKHVYILTPSK 488
>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
protein.
Length = 1951
Score = 26.2 bits (55), Expect = 7.9
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Frame = -3
Query: 307 GKNDNSTRL*DTSFNSTHGYC----SN--TADFVYVLQGKTESLVS--GASRRKDGVEGL 152
GK+ NS DT +++ Y SN TA + + T + V G K +E
Sbjct: 398 GKDVNSKIGGDTPISTSATYVMEDSSNLLTAIAINTTRSSTVAFVGTQGGQLHKILIESK 457
Query: 151 NKAFTFSLSFFTLNQPSLEPWHFGGRLQHV-ISVPAR 44
A ++ T N+P L FGG +HV I P++
Sbjct: 458 RSAEKYATEMLTDNEPILSDMEFGGDGKHVYILTPSK 494
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,762,802
Number of Sequences: 27780
Number of extensions: 205723
Number of successful extensions: 717
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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