Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M14
(291 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 27 0.56
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 0.97
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 26 1.3
SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz... 26 1.3
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 25 1.7
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 24 5.2
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 23 6.9
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 23 6.9
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 23 9.1
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 23 9.1
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 23 9.1
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.1 bits (57), Expect = 0.56
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 191 WGDLCPSVDLLWLNGWMKQVLS*TF*MNLCVRIYIS 84
+G++ D WLNG+ ++V+ T+ LC+R IS
Sbjct: 140 YGNINVYFDEEWLNGFHEKVIQKTYDHKLCLRKTIS 175
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 26.2 bits (55), Expect = 0.97
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 240 SPTRLLSVAIMTILPLLGRPMSISGPLMVEWMDETSIVLNLLN 112
+P + L +LPLL P + GPL + + D + L LLN
Sbjct: 96 TPKKNLVQIYNILLPLLLTPSLLQGPLNLHYADLLLLHLYLLN 138
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 1.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 111 EFMRSDLYKSEWF 73
+F+R DLY+ EWF
Sbjct: 204 KFLRPDLYRDEWF 216
>SPCC1393.11 |||mitochondrial ribosomal protein subunit
L20|Schizosaccharomyces pombe|chr 3|||Manual
Length = 197
Score = 25.8 bits (54), Expect = 1.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 283 MGSSILGVPQTLTAIANPPAKRGD 212
MGS I V +T +A NPPA D
Sbjct: 38 MGSKIAEVTETTSAYYNPPASSPD 61
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 1.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 77 HSDLYKSERINSFKRFR 127
HS++ + ERINS RFR
Sbjct: 289 HSEMVQRERINSLGRFR 305
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 23.8 bits (49), Expect = 5.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 270 SSEYHKHLLRSPTRLLSVAIMTILPLLG 187
S EYH + + P R + +A L L+G
Sbjct: 296 SVEYHAFVCQGPLRFIFIAFTGTLGLIG 323
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 23.4 bits (48), Expect = 6.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 9 ILNNNLANCFNEIKKIGNSNIQTI 80
+L+N L FN + I +SNI+ +
Sbjct: 626 VLDNILKRIFNSLTSINDSNIEKL 649
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 23.4 bits (48), Expect = 6.9
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 126 GQYLFHPSIQP 158
GQ L HPS+QP
Sbjct: 22 GQILLHPSVQP 32
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 23.0 bits (47), Expect = 9.1
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 186 RP-MSISGPLMVEWMDETSIVLNLLNEF 106
RP +SI+GP+ ++WM T +L F
Sbjct: 495 RPDISITGPIPIDWMLYTPHTEDLTENF 522
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 23.0 bits (47), Expect = 9.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 144 DETSIVLNLLNEFMRSDLYKSEWF 73
DE S+ +LN+FMR K WF
Sbjct: 440 DEASVAKMVLNDFMRG---KIPWF 460
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +2
Query: 71 PNHSDLYKSERINSFKRFRTILVSSIHSTIRG 166
PN LYKS +I + ++ T+RG
Sbjct: 638 PNDKTLYKSSKIREILKILSLDEQEEDDTVRG 669
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,292,301
Number of Sequences: 5004
Number of extensions: 25138
Number of successful extensions: 58
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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