Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M14
         (291 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0657 + 5015435-5016292,5016352-5016657                           31   0.16 
01_06_0749 - 31655348-31657339                                         27   3.3  
12_01_0052 + 433203-433292,433409-433815,434435-434447,437081-43...    26   4.4  
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335...    26   5.8  
05_06_0209 - 26389902-26389928,26389981-26390161,26390265-263904...    26   5.8  
01_07_0176 - 41733845-41734834,41736058-41736588                       25   7.7  

>01_01_0657 + 5015435-5016292,5016352-5016657
          Length = 387

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = -1

Query: 285 GWAAASSEYHKHLLRSPTRLLSVAIMTILPLLGRPMSISGPLMVE 151
           G AAA++E    LLR   RLL V ++ ++ LL  P+++  PL ++
Sbjct: 329 GGAAAAAELVVLLLRRVLRLLLVRLLVVVVLLLLPVAVVQPLQLQ 373


>01_06_0749 - 31655348-31657339
          Length = 663

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 285 GWAAASSEYHKHLLRSPTRLLSVAIMTILPLLGRPMSISGPLMVEWMDETSIVLN-LLNE 109
           G A  +  + + L+RS   +   +++ +LP  G P  + G +    +D  S V N LLN 
Sbjct: 126 GRACDAVIWFRALVRSGNSVSDGSLVAVLPAFGTPEQVHGLVKKIAIDSFSTVANSLLNS 185

Query: 108 F 106
           +
Sbjct: 186 Y 186


>12_01_0052 +
           433203-433292,433409-433815,434435-434447,437081-437473
          Length = 300

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -1

Query: 279 AAASSEYHKHLLRSPTRLLSVAIMTILPLLGRPMSISGPLMVEWMDETSIVLNLLN 112
           AAA  +YH+ ++R  T        +I+ + G+     GP + E  +  S+++NL+N
Sbjct: 20  AAAKEQYHEFVIRETTVKRLCKSQSIMTVNGQ---FPGPTL-EIKEGDSLIINLIN 71


>09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559,
            16033714-16033866,16034277-16034702,16035922-16037668,
            16037687-16038183,16038519-16038709,16038786-16038941,
            16040077-16040311,16040416-16040723,16041279-16041439,
            16041852-16041895,16041975-16042067
          Length = 1751

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 12   LNNNLANCFNEIKKIGNSNIQTIQTYINPNA*IHLKGLGQYLFHPSI 152
            +N+NL+   +  +KIGN     I+ Y++ +      GL  YL + ++
Sbjct: 972  INSNLSIISSAKEKIGNYERNIIENYVDADVAKQGSGLPDYLLNIAV 1018


>05_06_0209 -
           26389902-26389928,26389981-26390161,26390265-26390407,
           26390480-26390588,26390839-26391023,26391428-26392082,
           26392392-26392496,26392757-26392844,26392885-26392947,
           26393451-26393513,26394328-26394484
          Length = 591

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -1

Query: 228 LLSVAIMTILPLLGRPMSISGPLMVEWMDETSIVLNLLNEFMRSDLYKSEWFG 70
           +L   +   LP L  P  I G   + W  + +  +NL  E     + K +W G
Sbjct: 417 ILRRTVFNPLPGLSTPKGILGHERIIWFGDLNYRINLSYERAHELISKQDWDG 469


>01_07_0176 - 41733845-41734834,41736058-41736588
          Length = 506

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 186 SPIRGGWS*SPRLAGGLAIAVSVCGTPRMLLPI 284
           SP  G  + SPR AGG A A +   TP  ++P+
Sbjct: 76  SPSGGASASSPRGAGGSA-AAAAAATPGAVIPV 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,517,197
Number of Sequences: 37544
Number of extensions: 173614
Number of successful extensions: 412
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)