Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M14
         (291 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   1.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   3.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   4.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   5.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   5.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   5.4  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 235 NPPAKRGDYDHPP 197
           N P+KR DYD  P
Sbjct: 359 NTPSKRSDYDSRP 371


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 110 NLCVRIYISLNGL 72
           N+C R+Y SLN L
Sbjct: 36  NICKRVYSSLNSL 48


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = +3

Query: 9   ILNNNLANCFNEIKKIGNSNIQTI 80
           ++NN+   C+NE + +   N+  +
Sbjct: 322 LMNNSAIGCWNEHQPLQRENMDMV 345


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 176 PSVDLLWLNGWMKQ 135
           PS+D +W+  W  Q
Sbjct: 599 PSLDQVWILNWRNQ 612


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = +3

Query: 9   ILNNNLANCFNEIKKIGNSNIQTI 80
           ++NN+   C+NE + +   N+  +
Sbjct: 322 LVNNSAIGCWNEHQPLQRQNMDMV 345


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 71  PNHSDLYKSERINS 112
           PN +D Y  E IN+
Sbjct: 795 PNFADFYSEESINN 808


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -1

Query: 222 SVAIMTILPLLGRPMSISGPLMVEWMDETSIVLNLLNEF 106
           S ++ ++   L +  +I+ P+ V W  +  I+++  +EF
Sbjct: 228 SPSLTSLNAYLIKNQTITCPIKVSWRADGQIMVDYEDEF 266


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 238 ANPPAKRGDYDHPPLIGET 182
           A P ++RG+  + PL+ ET
Sbjct: 24  AVPSSQRGNVHNDPLVVET 42


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 238 ANPPAKRGDYDHPPLIGET 182
           A P ++RG+  + PL+ ET
Sbjct: 24  AVPSSQRGNVHNDPLVVET 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,949
Number of Sequences: 438
Number of extensions: 2076
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)