Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M12
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083...    27   3.0  
10_01_0013 + 154098-154101,154513-154673,154773-154847,155071-15...    26   6.9  
08_02_0311 - 15635165-15635590,15635777-15638698                       25   9.2  
08_01_0149 - 1176386-1177055,1177149-1177699                           25   9.2  
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194...    25   9.2  

>07_03_1584 +
           27907345-27907357,27907693-27908039,27908202-27908319,
           27908653-27908705,27908808-27908978,27909447-27909643,
           27909729-27909807,27909954-27909992,27910202-27910321,
           27910417-27910518,27910654-27910737,27910832-27911074,
           27911156-27911281,27911365-27911439,27911534-27911605,
           27911807-27911926,27912075-27912172,27912643-27912802,
           27912867-27912980,27913029-27913121,27913122-27913319,
           27913404-27913497,27914032-27914192
          Length = 958

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 94  LWLLMFNFVAKHRRVPVVSIHSCSVL 171
           L+ LMFNFV+   +V   S H CS L
Sbjct: 795 LFSLMFNFVSYFFQVCAPSCHDCSTL 820


>10_01_0013 +
           154098-154101,154513-154673,154773-154847,155071-155571,
           155873-156214,158107-158234,158296-158342,160117-160196,
           160569-160654,161409-161556,161947-162082,162160-162488,
           162953-163169,164547-164572
          Length = 759

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +1

Query: 13  FCIEGHNLLILTSYNT-YCD 69
           FCI+ HN L    Y T YCD
Sbjct: 396 FCIQNHNFLSPYMYGTSYCD 415


>08_02_0311 - 15635165-15635590,15635777-15638698
          Length = 1115

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 305  LTVTCYLDDLLRYRNDFLVQGSI*SYLCFNLQTVITVMGI 186
            L V C++  L  +   F+VQ    ++LC+ L   IT++ +
Sbjct: 931  LLVYCFIPALSLFSGFFIVQKLDIAFLCYLLTMTITLVAL 970


>08_01_0149 - 1176386-1177055,1177149-1177699
          Length = 406

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 293 CYL-DDLLRYRNDFLVQGSI*SYLCFNLQTVITVMGI 186
           CYL D+L  YR    +   I  ++  NL+T++TV  I
Sbjct: 351 CYLLDNLEAYRRKRWIWIPIHKFIYNNLKTIVTVFSI 387


>05_03_0653 +
           16617121-16617359,16618892-16618955,16619455-16619485,
           16619577-16619848,16620528-16620633,16620715-16620872,
           16621527-16621714,16621786-16621855,16622814-16622984,
           16624363-16624838,16625625-16625871,16626158-16626490,
           16627329-16627412,16627751-16627843,16627966-16628025,
           16628582-16628680,16628830-16628970,16629207-16629287,
           16629895-16629966,16631160-16631231,16632083-16632176,
           16632257-16632339,16632455-16632532,16632914-16632970,
           16633055-16633132,16633236-16633357,16633463-16633623,
           16634419-16634495,16634570-16634683,16634857-16634958,
           16635368-16635436,16635437-16635577,16635936-16636109,
           16636934-16637063,16637137-16637276,16637369-16637446,
           16637813-16637911,16638408-16638803
          Length = 1749

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 159 LLC--VSSVGEDSHYCYYCLQIKTQIRLYRSL 248
           LLC   SS+GE+S+  YYC      +  + SL
Sbjct: 600 LLCRVASSLGENSYVDYYCRDFPDNLVEFHSL 631


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,801,921
Number of Sequences: 37544
Number of extensions: 104419
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)