Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M11
         (297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   3.1  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    23   7.3  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    23   7.3  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    23   9.6  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    23   9.6  
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    23   9.6  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    23   9.6  

>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -3

Query: 100 PKYLSLIQTHTSKTMDYI 47
           P+Y+S++Q++  KT+D I
Sbjct: 390 PRYVSMVQSYALKTIDAI 407


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 186 NYSLRNINWTII 151
           NYSLRNI W ++
Sbjct: 71  NYSLRNIIWDVL 82


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 8   RHEGKIKKL*SKSDVIHS 61
           +HE +I  L SK++VIHS
Sbjct: 660 KHENQILLLESKNEVIHS 677


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = -1

Query: 180 SLRNINWTIIIFFCC---MKSQFFLVLIESPN 94
           ++  I W  +IF CC    KS  F  L+   N
Sbjct: 30  AILGIAWLFLIFLCCSCLTKSSIFARLLRVKN 61


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/43 (20%), Positives = 21/43 (48%)
 Frame = +1

Query: 88  INIWAFY*YQKELGFHTTKKNYNSPINIPQRVIVRNKKSRWSW 216
           + +W      K + F+T++   ++ + +P R+ +      WSW
Sbjct: 299 LQLWDLRNLNKSV-FNTSEDLSDNRLKVPSRLTLGGTSLSWSW 340


>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 118 KELGFHTTKKNYNSPINIPQRVIVRNKKSR 207
           K  GF TT+  Y++P  IP  V +R + S+
Sbjct: 136 KSFGFKTTEPYYHNP--IPNVVYMRLEMSK 163


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 8/29 (27%)
 Frame = -1

Query: 162 WTIIIFFCC--------MKSQFFLVLIES 100
           WTIIIF  C        M  +FFL L+ES
Sbjct: 164 WTIIIFLHCAAYNFSGLMALRFFLGLVES 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,194,213
Number of Sequences: 5004
Number of extensions: 21094
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)